Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
Package Information
No reported malware or high/critical advisories · Details
The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- anndata >=0.12.0
- cell2location >=0.1.5
- click >=8.3.0
- docopt >=0.6.2
- geopandas >=1.1.1
- geosketch >=1.3
- h5py >=3.14.0
- harmonypy >=0.0.10
- igraph >=0.11.9
- imageio >=2.37.0
- llvmlite >=0.45.1
- louvain >=0.8.2
- matplotlib >=3.9.4
- napari-spatialdata >=0.5.7
- numba >=0.62.1
- numpy >=2.2.6
- ome-zarr >=0.11.1
- pandas >=2.2.3
- pillow >=11.3.0
- pint >=0.25
- plotnine >=0.15.0
- pyarrow >=21.0.0
- pydeseq2 >=0.5.2
- pyyaml >=6.0.3
- scanpy >=1.10.4
- scikit-learn >=1.7.2
- scipy >=1.13.1
- scvi-tools >=1.4.0
- seaborn >=0.13.2
- setuptools <81,>=80.9.0
- shapely >=2.1.1
- spatialdata >=0.5.0
- spatialdata-io >=0.3.0
- spatialdata-plot >=0.2.11
- squidpy >=1.6.5
- statsmodels >=0.14.5
- tifffile >=2025.8.28
- typer >=0.16.0
- umap-learn >=0.5.7
- zarr >=2.18.7
22 optional dependencies
-
cellcharter>=0.3.5[extended]extra == "extended"
-
cellphonedb>=5.0.1[extended]extra == "extended"
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cytoolz>=1.0.1[extended]extra == "extended"
-
dask>=2024.11.2[extended]extra == "extended"
-
dask-expr>=1.1.19[extended]extra == "extended"
-
dask-image>=2024.5.3[extended]extra == "extended"
-
ipython>=9.5.0[extended]extra == "extended"
-
ktplotspy>=0.3.3[extended]extra == "extended"
-
leidenalg[extended]extra == "extended"
-
liana>=1.6.1[extended]extra == "extended"
-
loompy>=3.0.8[extended]extra == "extended"
-
opt-einsum>=3.3.0[extended]extra == "extended"
-
pims>=0.7[extended]extra == "extended"
-
pooch>=1.8.2[extended]extra == "extended"
-
pyogrio>=0.12.1[extended]extra == "extended"
-
pyro-api>=0.1.1[extended]extra == "extended"
-
pyro-ppl>=1.9.1[extended]extra == "extended"
-
pyscenic>=0.12.1[extended]extra == "extended"
-
pytorch-lightning>=2.5.5[extended]extra == "extended"
-
scikit-misc>=0.5.2[extended]extra == "extended"
-
torch>=2.8.0[extended]extra == "extended"
-
xarray>=2025.1.2[extended]extra == "extended"