PyRank
owkin

pydeseq2

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
PyPI GitHub
More links
Download Stats Documentation
Monthly downloads
276.5K
Weekly downloads
58.2K
GitHub stars
763

Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.

Package Information

Latest Version
0.5.4
Requires Python
>=3.11
Licence
MIT License
Last Release
8 months ago
Author
Boris Muzellec, Maria Telenczuk, Vincent Cabelli, Mathieu Andreux
First Release
December 21, 2022
Total Releases
31
Python Versions
3.11 3.12 3.13
No reported malware or high/critical advisories · Details

The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.

Package Insights

What's this?
Score breakdown - each component scores 0-100, weighted by percentage
Maintenance
90
Popularity
60
Adoption
64
Community
60
Provenance
0
How the maintenance status was determined
Last commit
18 days ago
Monthly downloads
276,508
• Active
Activity within 30 days
Stable
Activity within 31-180 days
Minimal
Activity within 181-365 days, or no activity data
At Risk
No activity for > 365 days, but > 10,000 monthly downloads
Archived
Repository flagged as archived on GitHub
How the popularity category was determined
Monthly downloads
276,508
Stars
763
Stars per 1k downloads
2.76
Industry Standard
> 10,000,000 monthly downloads
Hidden Gem
< 0.5 stars per 1k downloads and > 100,000 monthly downloads
Community Favorite
> 5 stars per 1k downloads
• Rising Star
Balanced ratio of stars to downloads
Unknown
Fewer than 1,000 monthly downloads, or no star data
How download momentum is calculated
Week daily avg
8,309
Month daily avg
9,217
Momentum
-9.8%
((week_daily_avg - month_daily_avg) / month_daily_avg) * 100
More insights and metrics
Python version support tiers
requires_python
>=3.11
Cutting Edge
Minimum supported version is 3.14 or newer
• Modern
Minimum supported version is 3.11 to 3.13
Legacy
Supports 3.10 or older (or Python 2)
Unknown
No requires_python specified or unparseable
License categories
License
MIT License
• Permissive
MIT, Apache, BSD, ISC, Unlicense, CC0, etc.
Copyleft
GPL, LGPL, AGPL, MPL, EPL, etc.
Proprietary
Commercial, all rights reserved, custom EULAs
Unknown
No license specified, or none of the above match
How the release cadence was determined
Last release
266 days ago
Total releases
31
Releases/year
8.1
Rapid
Last release within 365 days and > 12 releases/year
• Regular
Last release within 365 days
Slow
Last release 366-730 days ago
Stalled
Last release > 730 days ago, or no releases
Unknown
No usable release date available
How contributor risk was determined
Contributors
35
Monthly downloads
276,508
High Load
≤ 2 contributors and ≥ 50,000 monthly downloads
Moderate Load
< 10 contributors and ≥ 500,000 monthly downloads
Low Load
< 25 contributors and ≥ 5,000,000 monthly downloads, or sole maintainer with ≥ 10,000 monthly downloads
• Balanced
Enough contributors for the package's popularity
Unknown
No contributor data available
Engagement
59
 
Issue Burden
48.5
per 1k stars
Discussions
0.0
per 1k stars
Fork Ratio
38.5%
contrib / forks
Stale Release
247d
 
PR Velocity
Active
 
Not all downloads include detailed metadata. Breakdowns reflect the subset that does.

Downloads by OS

Linux 5.2K
Windows 223
macOS 177

Python Versions

3.12
41.9% 2.3K
3.10
32.1% 1.8K
3.11
14.2% 791
3.13
6.6% 366
3.14
5.1% 285

Top Countries

1. US US
4.3K
2. CN CN
699
3. SG SG
499
4. HK HK
111
5. JP JP
52
6. DE DE
32
7. IN IN
18
8. CH CH
16
9. GB GB
13
10. TH TH
12

Weekly Downloads

GitHub Stars

Dependencies

8
22 optional dependencies

Used By

47
View all 47 dependents

Repository details

Forks
91
Issues
37
Last Commit
2 weeks ago
Contributors
35
Open PRs
18
Archived
No

Data and sources

Tracking Since
September 26, 2026
Data Updated
October 11, 2026
Data Freshness
Fresh
Sources and methodology