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Dependencies
- array-api-compat >=1.7.1
- h5py >=3.8
- legacy-api-wrap
- natsort
- numpy >=1.26
- packaging >=24.2
- pandas !=2.1.2,<3,>=2.1.0
- scipy !=1.17.0,>=1.12
- scverse-misc >=0.0.3
- zarr !=3.0.*,>=2.18.7
63 optional dependencies
- aiohttp[test]
- aiohttp[lazy]
- awkward[test]
- awkward[test-min]
- awkward[doc]
- boltons[test]
- boltons[test-min]
- cupy[gpu]
- cupy-cuda11x[cu11]
- cupy-cuda12x[cu12]
- dask[test-min]
- dask[dask]
- dask[doc]
- dask[lazy]
- dask[test]
- filelock[test-min]
- filelock[test]
- ipython[doc]
- joblib[test]
- joblib[test-min]
- loompy[test-min]
- loompy[test]
- matplotlib[test-min]
- matplotlib[test]
- myst-nb[doc]
- myst-parser[doc]
- openpyxl[test-min]
- openpyxl[test]
- pooch[test-min]
- pooch[test]
- pyarrow[test-min]
- pyarrow[test]
- pytest[test-min]
- pytest[test]
- pytest-cov[test]
- pytest-cov[test-min]
- pytest-memray[test]
- pytest-memray[test-min]
- pytest-mock[test-min]
- pytest-mock[test]
- pytest-randomly[test-min]
- pytest-randomly[test]
- pytest-xdist[test-min]
- pytest-xdist[test]
- requests[test]
- requests[lazy]
- scanpy[test]
- scanpy[test-min]
- scanpydoc[doc]
- scikit-learn[test]
- scikit-learn[test-min]
- sphinx[doc]
- sphinx-autodoc-typehints[doc]
- sphinx-book-theme[doc]
- sphinx-copybutton[doc]
- sphinx-design[doc]
- sphinx-issues[doc]
- sphinxext-opengraph[doc]
- towncrier[dev]
- towncrier[dev-doc]
- towncrier[doc]
- xarray[lazy]
- xarray[test]
Used By
- scanpy
- mudata
- spatialdata
- pydeseq2
- scvi-tools
- tiledbsoma
- alphagenome
- somacore
- cellxgene-census
- squidpy
- annsel
- decoupler
- crested
- spatialdata-io
- readfcs
- muon
- anndata2ri
- illico
- napari-spatialdata
- liana
- scvelo
- scib-metrics
- scib
- omicverse
- single-cell-metabolomics
- pdex
- cellrank
- m3drop
- cellestial
- scimap
- lingergrn
- pywgcna
- cell-eval
- sciv
- scellrun
- anndataoom
- aiagents4pharma
- tiledb-cloud
- crispr-ambiguous-mapping
- scirpy
- ngio
- snapatac2
- tcrsift
- palantir
- exprmat
- helical
- rapids-singlecell
- linkapy
- rustscenic
- sopa