Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
Package Information
No reported malware or high/critical advisories · Details
The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
Package Insights
((week_daily_avg - month_daily_avg) / month_daily_avg) * 100More insights and metrics
Downloads by OS
Python Versions
Top Countries
Weekly Downloads
GitHub Stars
Dependencies
- anndata >=0.7.4
- docrep >=0.3.1
- mudata
- numba
- pandas <3
- plotnine >=0.10.1
- scanpy
- session-info2
- tqdm >=4.0
34 optional dependencies
-
bumpversion>=0.6.0[dev]extra == "dev"
-
cell2cell[extras]extra == "extras"
-
corneto==0.9.1-alpha.6[extras]extra == "extras"
-
coverage[test]extra == "test"
-
cvxpy-base>=1.6.1[extras]extra == "extras"
-
decoupler>=2.0.0[extras]extra == "extras"
-
docutils!=0.18.*,!=0.19.*,>=0.8[doc]extra == "doc"
-
gseapy>=1.1.0[extras]extra == "extras"
-
highspy>=1.9.0[dev]extra == "dev"
-
ipykernel[doc]extra == "doc"
-
ipython[doc]extra == "doc"
-
kneed>=0.7.0[extras]extra == "extras"
-
mofapy2>=0.7.0[extras]extra == "extras"
-
mofax[extras]extra == "extras"
-
muon[extras]extra == "extras"
-
myst-nb>=1.1[doc]extra == "doc"
-
omnipath>=1.0.6[extras]extra == "extras"
-
pre-commit[doc]extra == "doc"
-
pre-commit>=3.0.0[dev]extra == "dev"
-
pydeseq2>=0.3.5[extras]extra == "extras"
-
pyscipopt>=5.2.1[extras]extra == "extras"
-
pytest[test]extra == "test"
-
pytest>=8.0[dev]extra == "dev"
-
requests>=2.25.1[extras]extra == "extras"
-
setuptools[doc]extra == "doc"
-
sphinx<9,>=8.1[doc]extra == "doc"
-
sphinx-autodoc-typehints[doc]extra == "doc"
-
sphinx-book-theme>=1[doc]extra == "doc"
-
sphinx-copybutton[doc]extra == "doc"
-
sphinx-tabs>=3.4.5[doc]extra == "doc"
-
sphinxcontrib-bibtex>=1[doc]extra == "doc"
-
sphinxcontrib-mermaid>=0.9[doc]extra == "doc"
-
sphinxext-opengraph[doc]extra == "doc"
-
twine>=4.0.2[dev]extra == "dev"
Used By
- liana-mcp 360/mo
- recon 247/mo
- iflow-mcp-huang-sh-scmcp 203/mo
- iflow-mcp-scmcp 193/mo
- py-sigxtalk 124/mo