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Dependencies
- anndata >=0.9.1
- annsel >=0.1.2
- click
- dask >=2026.3.0
- dask-image
- datashader
- distributed >=2026.3.0
- fsspec
- geopandas >=0.14
- multiscale-spatial-image ==2.0.3
- networkx
- numba >=0.55.0
- numpy
- ome-zarr >=0.16.0
- pandas
- pooch
- pyarrow
- rich
- scikit-image
- scipy !=1.17.0
- setuptools
- shapely >=2.0.1
- spatial-image >=1.2.3
- typing-extensions >=4.8.0
- universal-pathlib >=0.2.6
- xarray >=2024.10.0
- xarray-spatial >=0.3.5
- zarr >=3.0.0
4 optional dependencies
- napari-spatialdata[extra]
- spatialdata-io[extra]
- spatialdata-plot[extra]
- torch[torch]
Used By
- squidpy
- spatialdata-plot
- spatialdata-io
- napari-spatialdata
- celldega
- exprmat
- sopa
- cellestial
- wsidata
- thyra
- napari-harpy
- easy-vitessce
- stlearn
- harpy-analysis
- histotuner
- cellcharter
- opendvp
- dvpimg
- dummy-spatialdata
- dvp-io
- pseudovisium
- b-hit
- histomap
- pcdl
- some-library
- harpy-vitessce
- scportrait
- cellpin
- palmettobug
- bento-tools
- resolutiontree
- mdvtools
- goatpy
- mintflow
- spatialx-connector
- troutpy
- histomaptx
- renoir-spatial
- graphcompass
- metaspace-converter
- napari-prism
- visiumhd-utils
- fetch-spatial
- segtraq
- spatialdata-xenium-explorer
- baits
- scomv
- spatialsnake
- smprofiler
- lamin-spatial