Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
Package Information
No reported malware or high/critical advisories · Details
The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- anndata >=0.10.8
- certifi
- fast-array-utils >=1.4
- h5py >=3.11
- joblib
- legacy-api-wrap >=1.5
- matplotlib >=3.10
- natsort
- networkx >=2.8.8
- numba >=0.60
- numpy >=2
- packaging >=25
- pandas >=2.3
- patsy
- pynndescent >=0.5.13
- scikit-learn >=1.6
- scipy >=1.13
- scverse-misc >=0.0.6
- seaborn >=0.13.2
- session-info2
- statsmodels >=0.14.5
- tqdm
-
typing-extensions
python_version < "3.13"
- umap-learn >=0.5.12
21 optional dependencies
-
anndata[dask]extra == "dask"
-
anndata[dask-ml]extra == "dask-ml"
-
bbknn[bbknn]extra == "bbknn"
-
colour-science[plotting]extra == "plotting"
-
cudf>=0.9[rapids]extra == "rapids"
-
cugraph>=0.9[rapids]extra == "rapids"
-
cuml>=0.9[rapids]extra == "rapids"
-
dask>=2024.5.1[dask-ml]extra == "dask-ml"
-
dask>=2024.5.1[dask]extra == "dask"
-
dask-ml[dask-ml]extra == "dask-ml"
-
harmonypy[harmony]extra == "harmony"
-
igraph>=0.10.8[leiden]extra == "leiden"
-
igraph[paga]extra == "paga"
-
igraph[louvain]extra == "louvain"
-
leidenalg>=0.10.1[leiden]extra == "leiden"
-
louvain>=0.8.2[louvain]extra == "louvain"
-
magic-impute>=2.0.4[magic]extra == "magic"
-
scanorama[scanorama]extra == "scanorama"
-
scikit-image>=0.23.1[scrublet]extra == "scrublet"
-
scikit-misc>=0.5.1[skmisc]extra == "skmisc"
-
setuptools[louvain]extra == "louvain"
Used By
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- muon 14.9K/mo