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Dependencies
- numba >=0.51.2
- numpy >=1.23
- pynndescent >=0.5
- scikit-learn >=1.6
- scipy >=1.3.1
- tqdm
12 optional dependencies
- bokeh[plot]
- colorcet[plot]
- dask[plot]
- datashader[plot]
- holoviews[plot]
- matplotlib[plot]
- pandas[plot]
- pytest[test]
- scikit-image[plot]
- seaborn[plot]
- tbb[tbb]
- tensorflow[parametric-umap]
Used By
- scanpy
- bertopic
- funasr
- tts
- graspologic
- wisent
- tmnt
- tiatoolbox
- embedding-atlas
- muon
- retentioneering
- bernn
- scvelo
- workbench
- scib-metrics
- scib
- senselab
- kura
- bbknn
- clustassesspy
- persona-vectors
- hal-spatial-harness
- top2vec
- lingergrn
- napatrackmater
- aeiou
- ayase
- fusion-tools
- howso-visuals
- nkululeko
- aiagents4pharma
- deeptcr
- altanalyze
- modeva
- exprmat
- blechpy
- cohortfinder
- ncut-pytorch
- bertrend
- ontrac
- exposeq
- xdat
- immuneml
- elementembeddings
- scgpt
- envisionhgdetector
- kailash-ml
- bblean
- llama-index-packs-raptor
- ark-analysis