Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
Package Information
No reported malware or high/critical advisories · Details
The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- h5py >=3.11
- hnswlib >=0.8
- huggingface-hub >=2.0.0
- igraph >=1.0.0
- leidenalg >=0.12
- loguru >=0.7
- networkx >=3
- numba >=0.60
- numcodecs >=0.16
- numpy >=2
- obstore >=0.5.1
- packaging
- pandas >=2.2.2
- scikit-learn >=1.5
- scipy !=1.17.0,>=1.15
- statsmodels >=0.14.5
- threadpoolctl >=3.5.0
- tqdm >=4.60
- umap-learn >=0.5.12
- zarr >=3.2.0
- zstandard >=0.25.0
31 optional dependencies
-
anndata>=0.12[extra]extra == "extra"
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anndata>=0.12[test]extra == "test"
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duckdb>=1.5.5[cytebase]extra == "cytebase"
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httpx>=0.28.1[cytebase]extra == "cytebase"
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ipykernel>=7.3.0[docs]extra == "docs"
-
ipython-autotime>=0.3[extra]extra == "extra"
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ipywidgets>=8[extra]extra == "extra"
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jupytext>=1.19.6[docs]extra == "docs"
-
kneed>=0.8.1[extra]extra == "extra"
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matplotlib>=3.9[extra]extra == "extra"
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matplotlib>=3.9[cytebase]extra == "cytebase"
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myst-parser[docs]extra == "docs"
-
mystmd>=1.11.0[docs]extra == "docs"
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nbclient[docs]extra == "docs"
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pydantic-ai-slim>=2.51.0[test]extra == "test"
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pydantic-ai-slim>=2.51.0[agent]extra == "agent"
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pytest>=7.0[test]extra == "test"
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pytest-cov>=4[test]extra == "test"
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pytest-xdist>=3[test]extra == "test"
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pytz>=2026.3.post1[cytebase]extra == "cytebase"
-
rdata>=1.1.0[test]extra == "test"
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scikit-network>=0.33.1[test]extra == "test"
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seaborn>=0.13[extra]extra == "extra"
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seaborn>=0.13[cytebase]extra == "cytebase"
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sgtsnepi>=0.7[tsne]extra == "tsne"
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sgtsnepi>=0.7[test](sys_platform == "linux" and platform_machine == "x86_64") and extra == "test"
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sgtsnepi>=0.7[docs](sys_platform == "linux" and platform_machine == "x86_64") and extra == "docs"
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sphinx[docs]extra == "docs"
-
sphinx-autodoc-typehints[docs]extra == "docs"
-
sphinx-book-theme[docs]extra == "docs"
-
sphinx-copybutton[docs]extra == "docs"