Scrna Seq Analysis Python Packages

palantir

Single cell trajectory detection

meld

Quantifying experimental perturbations at single cell resolution

scregulate

Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data

stcat

The single T cell annotation tool for scRNA-seq data

sccausalvi

Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data

sctreeshap

An effective tool for single-cell RNA sequencing.

scvital

Deep Learning Algorithm for cross-species integration of scRNA-seq data

pypairs

A python scRNA-Seq classifier

ageas

AutoML-based Genetic regulatory Element extrAction System

airqtl

Array of Interleaved Repeats for Quantitative Trait Loci

harmonyts

Harmony is a unified framework for data visualization, analysis and interpretation of scRNA-seq data measured across discrete time points

orthomap

orthomap is a python package to extract orthologous maps (in other words the evolutionary age of a given orthologous group) from OrthoFinder/eggNOG results. Orthomap results (gene ages per orthogroup) can be further used to calculate weigthed expression data (transcriptome evolutionary index) from scRNA sequencing objects.

northstar

Single cell type annotation guided by cell atlases, with freedom to be queer

pyscalr

scaLR: Single cell analysis using low resource.

swnn

Constructing a developmental tree from scRNA-seq data

scomix

Single-Cell Data Science