Scrna Seq Analysis Python Packages

palantir

Single cell trajectory detection

meld

Quantifying experimental perturbations at single cell resolution

stcat

The single T cell annotation tool for scRNA-seq data

sctreeshap

sctreeshap: a cluster tree data structure, and for shap analysis

pypairs

PyPairs - A python scRNA-Seq classifier

scvital

Deep Learning Algorithm for cross-species integration of scRNA-seq data

sccausalvi

Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data

scregulate

Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data

ageas

AutoML-based Genetic regulatory Element extrAction System

airqtl

Single-cell eQTL mapping and causal gene regulatory network inference at high efficiency and accuracy

harmonyts

Harmony is a unified framework for data visualization, analysis and interpretation of scRNA-seq data measured across discrete time points

pyscalr

Single cell analysis using Low Resource

northstar

Single cell type annotation guided by cell atlases, with freedom to be queer

orthomap

orthomap is a python package to extract orthologous maps (in other words the evolutionary age of a given orthologous group) from OrthoFinder/eggNOG results. Orthomap results (gene ages per orthogroup) can be further used to calculate weigthed expression data (transcriptome evolutionary index) from scRNA sequencing objects.

swnn

Constructing a developmental tree from scRNA-seq data

scomix

Single-Cell Data Science