batch-correction
Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:
Reference mapping for single-cell genomics
Fast, out-of-core single-cell analysis in Python for RNA, ATAC, protein, and multi-omic data, scaling to 100M+ cells. Mount remote datasets, work within a memory budget, and trace every result through built-in provenance.
ConDo: confounded domain adaptation via generative modeling (TMLR, 2024)
Harmony framework for connecting scRNA-seq data from discrete time points
Batch Effect Correction framework for metagenomic data
A Python tool for performing downstream analysis on Single-Cell RNA-seq datasets
