Zarr Python Packages

tifffile

Read and write TIFF files.

zarr

An implementation of chunked, compressed, N-dimensional arrays for Python.

imagecodecs

Image transformation, compression, and decompression codecs.

numpydantic

Type annotations for specifying, validating, and serializing arrays with arbitrary backends in Pydantic (and beyond)

ome-zarr

Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

imagecodecs-numcodecs

Image transformation, compression, and decompression codecs.

ome-zarr-models

A minimal Python package for reading, writing and validating OME-Zarr (meta)data

tensogram

A library for encoding and decoding binary scientific data with embedded semantic metadata in a network-transmissible binary message format.

cubed

Scalable array processing with bounded memory

fileglancer

Browse, share, and publish OME-Zarr data

multidimio

Cloud native, scalable storage engine for various types of energy data.

cellmap-data

Utility for loading CellMap data for machine learning training, utilizing PyTorch, TensorStore, Xarray, and PyDantic.

ome-writers

Unified API for streaming camera frames to either OME-TIFF or OME-Zarr format

xarray-beam

Distributed Xarray with Apache Beam

napari-ome-zarr

A napari plugin for zarr backed OME-NGFF images

zarrnii

Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations

tensogram-zarr

A library for encoding and decoding binary scientific data with embedded semantic metadata in a network-transmissible binary message format.

tensogram-xarray

A library for encoding and decoding binary scientific data with embedded semantic metadata in a network-transmissible binary message format.

tensogram-anemoi

A library for encoding and decoding binary scientific data with embedded semantic metadata in a network-transmissible binary message format.

echopype

Enabling interoperability and scalability in ocean sonar data analysis

thyra

A modern Python library for converting Mass Spectrometry Imaging (MSI) data into SpatialData/Zarr format - your portal to spatial omics

pangeo-forge-recipes

Pipeline tools for building and publishing analysis ready datasets.

eubi-bridge

A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processing and multi-dimensional concatenation.

cngi-prototype

Prototype Development of CNGI