single-cell-multiomics
PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).
Graph-linked unified embedding for single-cell multi-omics data integration
Accurate and fast cell marker gene identification with COSG
Single-cell eQTL mapping and causal gene regulatory network inference at high efficiency and accuracy
SCOIT is an implementation of a probabilistic tensor decomposition framework for single-cell multi-omics data integration.
Context specific and dynamic gene regulatory network reconstruction and analysis
Python package implementing our method MatchCLOT for multimodal single-cell data integration
