Cite Seq Python Packages

scvi-tools

Deep probabilistic analysis of single-cell and spatial omics data

muon

muon is a multimodal omics Python framework

scvi

Deep probabilistic analysis of single-cell and spatial omics data

scarf

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

scperturb

scPerturb: A resource and a python/R tool for single-cell perturbation data

fba

Tools for single-cell feature barcoding analysis

scarf-toolkit

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.