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Cite Seq Python Packages

Python packages with the GitHub topic cite-seq. Sorted by relevance, with stars and monthly downloads.
scverse
scvi-tools

Deep probabilistic analysis of single-cell and spatial omics data

94K 2K 450
scverse
muon

muon is a multimodal omics Python framework

29K 267 35
YosefLab
scvi

Deep probabilistic analysis of single-cell and spatial omics data

2K 2K 450
parashardhapola
scarf

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

2K 116 15
sanderlab
scperturb

scPerturb: A resource and a python/R tool for single-cell perturbation data

585 174 12
jlduan
fba

Tools for single-cell feature barcoding analysis

383 6 3
parashardhapola
scarf-toolkit

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

6 116 15
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