Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
Package Information
No reported malware or high/critical advisories · Details
The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- biopython <2,>=1.81
- matplotlib <4,>=3.7
- networkx <4,>=3.0
- numpy <3,>=1.24
- pandas <3,>=2.0
- plotly <7,>=5.0
- scikit-learn <2,>=1.3
- scipy <2,>=1.10
- seaborn <1,>=0.12
- tqdm <5,>=4.65
27 optional dependencies
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anndata>=0.9[bio]extra == "bio"
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biosuite-ultra[full]extra == "full"
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biotite>=0.37[bio]extra == "bio"
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cobra>=0.26[bio]extra == "bio"
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customtkinter<6,>=5.2[gui]extra == "gui"
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cutadapt>=4.0[bio]extra == "bio"
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ete3>=3.1[bio]extra == "bio"
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fastapi>=0.100[api]extra == "api"
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goatools>=1.3[bio]extra == "bio"
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gseapy>=1.0[bio]extra == "bio"
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httpx>=0.24[dev]extra == "dev"
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ipython>=8.0[notebook]extra == "notebook"
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ipywidgets>=8.0[notebook]extra == "notebook"
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pysam>=0.21[full]extra == "full"
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pytest>=7.0[dev]extra == "dev"
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pytest-asyncio>=0.23[dev]extra == "dev"
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pytest-cov>=4.0[dev]extra == "dev"
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pytest-xdist>=3.0[dev]extra == "dev"
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python-jose>=3.3[api]extra == "api"
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ruff>=0.4[dev]extra == "dev"
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scanpy>=1.9[bio]extra == "bio"
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scikit-bio>=0.5[bio]extra == "bio"
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shap>=0.42[bio]extra == "bio"
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slowapi>=0.1.9[api]extra == "api"
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statsmodels>=0.14[bio]extra == "bio"
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umap-learn>=0.5[bio]extra == "bio"
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uvicorn>=0.23[api]extra == "api"