Crispr Python Packages | PyRank

pen-stack

Open infrastructure for genome writing: the Writable Genome (learned safe+durable insertion-site atlas), the Writer Atlas of 33k genome-writing enzymes, an inverse-design Write Planner, and a bridge-recombinase off-target engine. Consolidates 5 prior repos. Pre-registered, blind-validated, single install.

26K 0 0

mgsurve

Python package to optimize mosquito traps' positioning in field trials.

3K 1 1

monet-mgdrive

Contains the code for the pypi package to do the data analysis portion of the MGDrivE project.

2K 0 0

diced

A Rust reimplementation of the MinCED method for identifying CRISPRs in full or assembled genomes.

2K 4 1

karyon

Legible, deterministic QC/qualification for bio-AI tool outputs — named-reason contracts + agent skills that compose with NVIDIA BioNeMo.

2K 0 0

dotmatch

Fast exact short-DNA known-target assignment for CRISPR guides, barcodes, primers, panels, and whitelists.

2K 2 0

genet

Python library for genome editing, CRISPR gRNA design and prediction

1K 21 6

spacr

spaCR Spatial phenotype analysis of CRISPR–Cas9 screens (spaCR)

1K 7 2

cy

Python module to analyse CRISPR-based libraries

1K 14 4

screenpro2

Flexible analysis of high-content CRISPR screening

889 33 7

cctyper

CCTyper: Automatic detection and subtyping of CRISPR-Cas operons

779 111 22

spacr-nightly

Spatial phenotype analysis of crisp screens (SpaCr)

548 6 0

crispresso

Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data

501 142 58

crispio

🌱 Designing CRISPRi experiments in bacteria

471 0 3

berets

Base Editing screens' Activity-Normalized variant effect size estimation

457 11 4

fba

Tools for single-cell feature barcoding analysis

425 6 3

crispyx

Memory-efficient streaming analysis of large-scale CRISPR and Perturb-seq screens on disk-backed AnnData files

382 2 0

vintools

Michael Vinyard's utilities

381 2 2

crispr-bean

Base Editing screens' Activity-Normalized variant effect size estimation

380 11 4

crisprhawk

Variant- and Haplotype-aware CRISPR guide design toolkit

380 7 4

py-crispr-analyser

Python module and scripts to analyse CRISPRs and off-targets from a genome

320 0 0

synthego-ice

Synthego ICE - Inference of CRISPR Editing software

223 70 34

genome-atlas

Unified knowledge graph and embedding space for programmable genome-writing enzymes

219 0 0

mech-class

Mechanism-aware classification of DNA-modifying enzymes

216 0 0