Ngs Python Packages

pysam

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

1.2M 896 298

peppy

Project metadata manager for PEPs in Python

124K 40 13

galaxy-util

Data intensive science for everyone.

70K 2K 1K

galaxy-tool-util

Data intensive science for everyone.

65K 2K 1K

galaxy-tool-util-models

Data intensive science for everyone.

54K 2K 1K

deeptools

Tools to process and analyze deep sequencing data.

39K 762 222

cooler

A cool place to store your Hi-C

16K 241 60

pairtools

Extract 3D contacts (.pairs) from sequencing alignments

10K 133 38

barcode

NGS barcode design and validation.

10K 6 2

oxbow

Oxbow makes genomic data ready for high-performance analytics.

9K 154 17

galaxy-containers

Data intensive science for everyone.

7K 2K 1K

galaxy-objectstore

Data intensive science for everyone.

5K 2K 1K

galaxy-job-metrics

Data intensive science for everyone.

4K 2K 1K

s4-clarity

A modern Python library for BaseSpace Clarity LIMS.

3K 15 12

arda-mapper

High-throughput mapping and domain partitioning of antigen receptor sequences

3K 55 19

galaxy-data

Data intensive science for everyone.

3K 2K 1K

galaxy-app

Data intensive science for everyone.

3K 2K 1K

galaxy-files

Data intensive science for everyone.

3K 2K 1K

galaxy-web-framework

Data intensive science for everyone.

3K 2K 1K

galaxy-job-execution

Data intensive science for everyone.

3K 2K 1K

sequana

Sequana: a set of Snakemake NGS pipelines

3K 151 27

galaxy-web-stack

Data intensive science for everyone.

3K 2K 1K

strkit

A short tandem repeat (STR) genotyping and analysis toolkit for long reads

3K 19 1

galaxy-schema

Data intensive science for everyone.

2K 2K 1K