Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
Package Information
No reported malware or high/critical advisories · Details
The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- apsw
- bbknn
- cgatcore
- drmaa
- gevent
- harmonypy
- jax
- jaxlib
- leidenalg
- louvain
- matplotlib
- mofapy2
- muon
- openpyxl
- paramiko
- pysam
- pyyaml
- ruffus
- scanorama
- scanpy
- scib
- scib-metrics
- scikit-misc
- scirpy
- scrublet
- scvi-tools
- seaborn
- sqlalchemy
19 optional dependencies
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build[dev]extra == "dev"
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cell2location[spatial]extra == "spatial"
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dask[spatial]extra == "spatial"
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jax[spatial]extra == "spatial"
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jaxlib[spatial]extra == "spatial"
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jupyter[notebook]extra == "notebook"
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jupyterlab[notebook]extra == "notebook"
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packaging[dev]extra == "dev"
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pandas<2.0.0[refmap-old]extra == "refmap-old"
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pytest[dev]extra == "dev"
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scib[refmap-old]extra == "refmap-old"
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scipy[spatial]extra == "spatial"
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scvi-tools[spatial]extra == "spatial"
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scvi-tools[refmap-old]extra == "refmap-old"
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spatialdata[spatial]extra == "spatial"
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spatialdata-io[spatial]extra == "spatial"
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squidpy[spatial]extra == "spatial"
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tangram-sc[spatial]extra == "spatial"
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twine[dev]extra == "dev"