Monthly downloads
8.6K
Weekly downloads
2.1K
GitHub stars
432
Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
Package Information
Latest Version
Requires Python
>=3.11
Licence
MIT
Last Release
5 months ago
Author
Maren Buettner, Daniel C. Strobl
First Release
October 24, 2021
Total Releases
14
Python Versions
3
3.11
No reported malware or high/critical advisories · Details
The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
Package Insights
Score breakdown - each component scores 0-100, weighted by percentage
Maintenance
55
Popularity
55
Adoption
59
Community
55
Provenance
0
How the maintenance status was determined
Last commit
172 days ago
Monthly downloads
8,563
Active
Activity within 30 days
•
Stable
Activity within 31-180 days
Minimal
Activity within 181-365 days, or no activity data
At Risk
No activity for > 365 days, but > 10,000 monthly downloads
Archived
Repository flagged as archived on GitHub
How the popularity category was determined
Monthly downloads
8,563
Stars
432
Stars per 1k downloads
50.45
Industry Standard
> 10,000,000 monthly downloads
Hidden Gem
< 0.5 stars per 1k downloads and > 100,000 monthly downloads
•
Community Favorite
> 5 stars per 1k downloads
Rising Star
Balanced ratio of stars to downloads
Unknown
Fewer than 1,000 monthly downloads, or no star data
How download momentum is calculated
Week daily avg
295
Month daily avg
285
Momentum
+3.4%
((week_daily_avg - month_daily_avg) / month_daily_avg) * 100More insights and metrics
Python version support tiers
requires_python
>=3.11
Cutting Edge
Minimum supported version is 3.14 or newer
•
Modern
Minimum supported version is 3.11 to 3.13
Legacy
Supports 3.10 or older (or Python 2)
Unknown
No requires_python specified or unparseable
License categories
License
MIT
•
Permissive
MIT, Apache, BSD, ISC, Unlicense, CC0, etc.
Copyleft
GPL, LGPL, AGPL, MPL, EPL, etc.
Proprietary
Commercial, all rights reserved, custom EULAs
Unknown
No license specified, or none of the above match
How the release cadence was determined
Last release
171 days ago
Total releases
14
Releases/year
2.8
Rapid
Last release within 365 days and > 12 releases/year
•
Regular
Last release within 365 days
Slow
Last release 366-730 days ago
Stalled
Last release > 730 days ago, or no releases
Unknown
No usable release date available
How contributor risk was determined
Contributors
41
Monthly downloads
8,563
High Load
≤ 2 contributors and ≥ 50,000 monthly downloads
Moderate Load
< 10 contributors and ≥ 500,000 monthly downloads
Low Load
< 25 contributors and ≥ 5,000,000 monthly downloads, or sole maintainer with ≥ 10,000 monthly downloads
•
Balanced
Enough contributors for the package's popularity
Unknown
No contributor data available
Engagement
63
Issue Burden
90.3
per 1k stars
Discussions
0.0
per 1k stars
Fork Ratio
51.9%
contrib / forks
Stale Release
No
PR Velocity
Quiet
Not all downloads include detailed metadata. Breakdowns reflect the subset that does.
Downloads by OS
Linux
118
macOS
14
Windows
9
Python Versions
3.11
29.3%
36
3.12
26.8%
33
3.10
26.0%
32
3.14
9.8%
12
3.13
8.1%
10
Top Countries
1.
US
122
US
2.
CN
11
CN
3.
SG
7
SG
4.
AU
4
AU
5.
DE
4
DE
6.
HK
3
HK
7.
JP
3
JP
8.
GB
2
GB
9.
TW
2
TW
10.
IN
1
IN
Weekly Downloads
GitHub Stars
Dependencies
19
- anndata >=0.7.2
- deprecated
- h5py
- igraph >=0.10
- leidenalg
- llvmlite
- matplotlib
- numba
- numpy
- pandas >=2
- pydot
- scanpy >=1.5
- scikit-learn
- scikit-misc
- scipy
- seaborn
- setuptools
- umap-learn
- zarr
28 optional dependencies
-
anndata2ri<2,>=1.3[rpy2-r4-4]extra == "rpy2-r4-4"
-
anndata2ri<3,>=2.0[rpy2-r4-5]extra == "rpy2-r4-5"
-
bbknn==1.3.9[bbknn]extra == "bbknn"
-
build[dev]extra == "dev"
-
codecov[test]extra == "test"
-
desc==2.0.3[desc]extra == "desc"
-
harmony-pytorch[harmony]extra == "harmony"
-
igraph[louvain]extra == "louvain"
-
isort[dev]extra == "dev"
-
louvain>=0.8[louvain]extra == "louvain"
-
mnnpy==0.1.9.5[mnn]extra == "mnn"
-
myst-parser[docs]extra == "docs"
-
pre-commit[dev]extra == "dev"
-
pytest[test]extra == "test"
-
pytest-benchmark[test]extra == "test"
-
pytest-cov[test]extra == "test"
-
pytest-icdiff[test]extra == "test"
-
rpy2<3.6[rpy2-r4-4]extra == "rpy2-r4-4"
-
rpy2<4,>=3.6[rpy2-r4-5]extra == "rpy2-r4-5"
-
scanorama>=1.7.4[scanorama]extra == "scanorama"
-
scgen>=2.1.0[scgen]extra == "scgen"
-
scvi-tools>=0.16[scvi]extra == "scvi"
-
sphinx[docs]extra == "docs"
-
sphinx-automodapi[docs]extra == "docs"
-
sphinx-rtd-theme[docs]extra == "docs"
-
trvae==1.1.2[trvae]extra == "trvae"
-
trvaep==0.1.0[trvaep]extra == "trvaep"
-
twine[dev]extra == "dev"
Used By
17
- scgpt 2.0K/mo
- multibench-sc 1.7K/mo
- scprint 579/mo
- celldisect 357/mo
- bento-sc 355/mo
- biobatchnet 337/mo
- dotools-py 332/mo
- panpipes 292/mo
- methylgpt 281/mo
- scprint2 258/mo
Data and sources
Tracking Since
September 26, 2026
Data Updated
October 11, 2026
Data Freshness
Fresh
Keywords