Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
Package Information
No reported malware or high/critical advisories · Details
The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- adjusttext
- anndata >=0.12
- colorcet
- dask >=2024.0
- dask-image
- geopandas
- igraph
- leidenalg
- magicgui
- matplotlib
- napari >=0.5
- networkx
- numcodecs
- numpy >=1.26
- omnipath
- opencv-python
- pandas >=2.0
- pillow
- platformdirs
- pyarrow >=15
- pygments
- pyqt6
- qtpy
- scanpy >=1.12
- scikit-image
- scikit-learn
- scipy
- seaborn
- shapely >=2
- spatialdata >=0.7
- spatialdata-io >=0.6
- squidpy >=1.8.2
- superqt
- tifffile
- tqdm
- umap-learn
- xarray
- zarr <3.2,>=3.0
35 optional dependencies
-
anndata2ri[full]extra == "full"
-
anndata2ri[r]extra == "r"
-
celltypist[celltypist]extra == "celltypist"
-
celltypist[full]extra == "full"
-
fastmcp<3,>=2.10.3[mcp]extra == "mcp"
-
infercnvpy>=0.6.0[cnv]extra == "cnv"
-
infercnvpy>=0.6.0[full]extra == "full"
-
insitucnv-copykat>=0.3[cnv]extra == "cnv"
-
insitucnv-copykat>=0.3[full]extra == "full"
-
ipykernel[test]extra == "test"
-
ipykernel[dev]extra == "dev"
-
napari-mcp>=0.1.0[mcp]extra == "mcp"
-
nbclient[dev]extra == "dev"
-
nbclient[test]extra == "test"
-
nbformat[test]extra == "test"
-
nbformat[dev]extra == "dev"
-
novae[full]extra == "full"
-
novae[novae]extra == "novae"
-
pytest[test]extra == "test"
-
pytest[dev]extra == "dev"
-
pytorch-lightning[gpu]extra == "gpu"
-
pytorch-lightning[full]extra == "full"
-
rasterio[full]extra == "full"
-
rasterio[references]extra == "references"
-
readfcs[full]extra == "full"
-
readfcs[references]extra == "references"
-
rpy2[full]extra == "full"
-
rpy2[r]extra == "r"
-
ruff[dev]extra == "dev"
-
torch[gpu]extra == "gpu"
-
torch[full]extra == "full"
-
torch-geometric[gpu]extra == "gpu"
-
torch-geometric[full]extra == "full"
-
xgboost[full]extra == "full"
-
xgboost[gpu]extra == "gpu"