Napari Python Packages

npe2

napari plugin engine v2

napari

napari: a fast, interactive, multi-dimensional image viewer for python

napari-plugin-manager

napari plugin manager to provide a graphical user interface for installing napari plugins.

napari-omero

Browse your OMERO database from within napari.

partseg

Tool for segmentation in bioimaging

openhcs

Typed, reproducible high-content microscopy workflows across GUI, Python, CellProfiler, Napari/Fiji, GPU, and local MCP agents.

napatrackmater

Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.

napari-matplotlib

Linking napari layers with Matplotlib plots

napari-skimage-regionprops

Feature extraction for labeled objects in images using regionprops from scikit-image

napari-spatialdata

Interactive visualization of spatial omics data

micro-sam

Segment Anything for Microscopy

brainreg-segment

Segmentation of anatomical structures in a common coordinate space

napari-animation

A napari plugin for making animations

napari-pyclesperanto-assistant

GPU-accelerated general purpose image processing and image analysis in napari

impy-array

Speed up coding/extending image analysis in Python.

cellfinder-napari

Efficient cell detection in large images using cellfinder in napari

brainglobe-segmentation

Segmentation of anatomical structures in a common coordinate space

blik

Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.

mikro-napari

napari within the mikro environment

lls-core

Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for data from the Zeiss lattice lightsheet microscope.

zenreg

ZenReg is a Python-based high-throughput, memory-efficient pipeline for N-dimensional image registration, designed for large microscopy and imaging datasets.

napari-filaments

A napari plugin for filament analysis

napari-allencell-segmenter

A plugin that enables image segmentation provided by Allen Institute for Cell Science

napari-lattice

Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for data from the Zeiss lattice lightsheet microscope.