Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
Package Information
No reported malware or high/critical advisories · Details
The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- adjusttext
- anndata >=0.9.2
- appdirs
- bbknn
- celltypist
- doubletdetection >=4.3
-
fast-array-utils
>=1.2.1
python_version >= "3.11"
- fastexcel
- gseapy <1.1.11
- harmony-pytorch
- harmonypy
- jupyter
- numba
- numpy >=1.26.4
- pandas >=2.2.3
- polars >=1.30
- pydeseq2
- requests
- rich <14
- scanorama
- scanpro
- scanpy
- scib
- scikit-image
- scipy
- scvi-tools >=1.3
- session-info2
- tqdm
55 optional dependencies
-
adjusttext[test]extra == "test"
-
anndata[test]extra == "test"
-
appdirs[test]extra == "test"
-
bbknn[test]extra == "test"
-
bbknn[doc]extra == "doc"
-
celltypist[test]extra == "test"
-
celltypist[doc]extra == "doc"
-
coverage[test]extra == "test"
-
docutils!=0.18.*,!=0.19.*,>=0.8[doc]extra == "doc"
-
doubletdetection[doc]extra == "doc"
-
doubletdetection[test]extra == "test"
-
fastexcel[test]extra == "test"
-
gseapy[doc]extra == "doc"
-
gseapy[test]extra == "test"
-
ipykernel[doc]extra == "doc"
-
ipython[test]extra == "test"
-
ipython[doc]extra == "doc"
-
jupyter[doc]extra == "doc"
-
matplotlib[test]extra == "test"
-
matplotlib[doc]extra == "doc"
-
myst-nb>=1.1[doc]extra == "doc"
-
numba[test]extra == "test"
-
numpy[test]extra == "test"
-
pandas[doc]extra == "doc"
-
pandas[test]extra == "test"
-
polars[doc]extra == "doc"
-
polars[test]extra == "test"
-
pre-commit[dev]extra == "dev"
-
pyarrow[test]extra == "test"
-
pydeseq2[doc]extra == "doc"
-
pytest[test]extra == "test"
-
rich<14[test]extra == "test"
-
scanpy[test]extra == "test"
-
scanpydoc[doc]extra == "doc"
-
scib[doc]extra == "doc"
-
scipy[doc]extra == "doc"
-
scipy[test]extra == "test"
-
scvi-tools[test]extra == "test"
-
scvi-tools[doc]extra == "doc"
-
seaborn[doc]extra == "doc"
-
seaborn[test]extra == "test"
-
setuptools[doc]extra == "doc"
-
spatialdata[doc]extra == "doc"
-
sphinx>=8.1[doc]extra == "doc"
-
sphinx-autodoc-typehints[doc]extra == "doc"
-
sphinx-book-theme>=1[doc]extra == "doc"
-
sphinx-copybutton[doc]extra == "doc"
-
sphinx-design[doc]extra == "doc"
-
sphinx-tabs[doc]extra == "doc"
-
sphinxcontrib-bibtex>=1[doc]extra == "doc"
-
sphinxext-opengraph[doc]extra == "doc"
-
tqdm[doc]extra == "doc"
-
tqdm[test]extra == "test"
-
twine>=4.0.2[dev]extra == "dev"
-
zarr[test]extra == "test"