Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
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The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- adjusttext <2.0,>=1.2.0
- biopython <2.0,>=1.80
- bottleneck <2.0,>=1.3.6
- captum <1.0,>=0.7.0
- cellpose <5.0,>=4.0.7
- cloudpickle <4,>=3.1.2
- cycler <1,>=0.10
- czifile
- fastremap >=1.14.1
-
glum
<4,>=3.1.2
python_version >= "3.10"
- gputil <2.0,>=1.4.0
-
gpytorch
<2,>=1.11
python_version >= "3.10"
- huggingface-hub <1.0,>=0.25
- imageio <3.0,>=2.34.0
- ipython <10,>=8.18.1
- ipywidgets <9.0,>=8.1.2
- joblib <2.0,>=1.2
-
llvmlite
<1.0,>=0.43
sys_platform != "darwin" or platform_machine != "x86_64"
- lxml >=5.1.0
- matplotlib <4.0,>=3.8.3
- matplotlib-venn <2.0,>=1.1
- mpmath <2,>=1.3
- natsort <9.0,>=8.0
- nd2reader <4.0,>=3.3.0
-
numba
<1.0,>=0.60
sys_platform != "darwin" or platform_machine != "x86_64"
- numexpr <3.0,>=2.8.4
- numpy <3.0,>=1.26.4
- nvidia-ml-py <14,>=11.450.51
- opencv-python-headless <5.0,>=4.9.0.80
- openpyxl <4.0,>=3.1
- packaging >=21.3
- pandas <4.0,>=2.2.1
- patsy <2.0,>=0.5.6
- pillow <13,>=10.2.0
- protobuf >=5.28.3
- psutil <8,>=5.9.8
-
pyfixest
<1,>=0.40.1
python_version >= "3.10"
- pypdf <7.0,>=6.16.1
- pyqtgraph <1,>=0.13.3
- pyside6 <7,>=6.6
- pywavelets <2,>=1.4
- qtawesome <2,>=1.3
- readlif
- requests <3.0,>=2.28
- scikit-image <0.28,>=0.22.0
- scikit-learn <2.0,>=1.5.0
- scikit-posthocs <0.20,>=0.10.0
- scipy <2.0,>=1.12.0
- seaborn <1.0,>=0.13.2
- shap <1.0,>=0.47.0
- statsmodels <0.15,>=0.14.0
- tables <4.0,>=3.8.0
- tensorboard <3.0,>=2.21
- tifffile >=2023.4.12
-
torch
<3.0,>=2.0
sys_platform != "darwin" or platform_machine != "x86_64" or python_version < "3.13"
-
torchvision
<1.0,>=0.15
sys_platform != "darwin" or platform_machine != "x86_64" or python_version < "3.13"
- tqdm >=4.65.0
- trackpy <1.0,>=0.6.2
- umap-learn <1.0,>=0.5.11
- vispy <1.0,>=0.14
-
win10toast
>=0.9
platform_system == "Windows"
- xgboost <4,>=2.0.3
92 optional dependencies
-
adlfs>=2023.1[cloud]extra == "cloud"
-
aiohttp<4,>=3.8[cloud]extra == "cloud"
-
anndata<0.13,>=0.10[all]extra == "all"
-
anndata<0.13,>=0.10[anndata]extra == "anndata"
-
botocore<2,>=1.29[cloud]extra == "cloud"
-
btrack<1.0,>=0.7.0[all]extra == "all"
-
btrack<1.0,>=0.7.0[btrack]extra == "btrack"
-
catboost<2.0,>=1.2[all]extra == "all"
-
catboost<2.0,>=1.2[boosting]extra == "boosting"
-
cucim-cu12>=24.0[gpu]platform_system == "Linux" and extra == "gpu"
-
cuml-cu12>=25.2[rapids](python_version >= "3.11" and python_version < "3.13") and extra == "rapids"
-
cupy-cuda12x>=13.0[rapids](python_version >= "3.11" and python_version < "3.13") and extra == "rapids"
-
cupy-cuda12x>=13.0[gpu]platform_system == "Linux" and extra == "gpu"
-
czifile[czi]extra == "czi"
-
czifile[all]extra == "all"
-
dinocell<1.0,>=0.74[dinocell]extra == "dinocell"
-
docutils<0.24,>=0.20.1[dev]extra == "dev"
-
duckdb<2,>=1.1[databases]extra == "databases"
-
faiss-cpu<2,>=1.7.4[search]extra == "search"
-
fsspec>=2023.1[cloud]extra == "cloud"
-
gcsfs>=2023.1[cloud]extra == "cloud"
-
glum<4,>=3.1.2[glum]python_version >= "3.10" and extra == "glum"
-
gpytorch<2,>=1.11[gpytorch]python_version >= "3.10" and extra == "gpytorch"
-
hypothesis<7,>=6.100[dev]extra == "dev"
-
intel-extension-for-pytorch>=2.1[intel-gpu]platform_system != "Darwin" and extra == "intel-gpu"
-
jax<1.0,>=0.4[numpyro]extra == "numpyro"
-
keyring<27,>=23.0[notify]extra == "notify"
-
lifelines<1,>=0.27[survival]extra == "survival"
-
lightgbm<5.0,>=4.0[all]extra == "all"
-
lightgbm<5.0,>=4.0[boosting]extra == "boosting"
-
mahotas<2.0,>=1.4.13[zernike]python_version < "3.13" and extra == "zernike"
-
mahotas<2.0,>=1.4.13[all]python_version < "3.13" and extra == "all"
-
mypy<2,>=1.11[dev]extra == "dev"
-
napari<1.0,>=0.5[napari]extra == "napari"
-
nd2reader<4.0,>=3.3.0[all]extra == "all"
-
nd2reader<4.0,>=3.3.0[nd2]extra == "nd2"
-
numcodecs<1,>=0.12[zarr]extra == "zarr"
-
numpyro<1.0,>=0.13[numpyro]extra == "numpyro"
-
omero-py<6,>=5.17[omero]extra == "omero"
-
opencv-python[full]extra == "full"
-
opencv-python-headless<5.0,>=4.9.0.80[headless]extra == "headless"
-
pdfplumber<1,>=0.11[papers]extra == "papers"
-
pingouin<2.0,>=0.5.5[dev]extra == "dev"
-
piper-tts<2,>=1.2[all](sys_platform != "darwin" or platform_machine != "x86_64" or python_version < "3.14") and extra == "all"
-
piper-tts<2,>=1.2[tutorial](sys_platform != "darwin" or platform_machine != "x86_64" or python_version < "3.14") and extra == "tutorial"
-
psycopg<4,>=3.1[databases]extra == "databases"
-
pyarrow<26,>=14.0.2[dev]extra == "dev"
-
pycromanager<1,>=0.28[microscope]extra == "microscope"
-
pyfixest<1,>=0.40.1[pyfixest]python_version >= "3.10" and extra == "pyfixest"
-
pylibczirw<7.0,>=5.0.0[all]python_version < "3.14" and extra == "all"
-
pylibczirw<7.0,>=5.0.0[czi]python_version < "3.14" and extra == "czi"
-
pymc<6.0,>=5.10[pymc]extra == "pymc"
-
pyqtgraph<1,>=0.13.3[all]extra == "all"
-
pyqtgraph<1,>=0.13.3[qt]extra == "qt"
-
pyside6<7,>=6.6[tutorial]extra == "tutorial"
-
pyside6<7,>=6.6[flowview]extra == "flowview"
-
pyside6<7,>=6.6[qt]extra == "qt"
-
pyside6<7,>=6.6[all]extra == "all"
-
pytest<9,>=8.0[dev]extra == "dev"
-
pytest-qt<5,>=4.4[dev]extra == "dev"
-
pytest-xdist<4,>=3.6.1[dev]extra == "dev"
-
qtawesome<2,>=1.3[qt]extra == "qt"
-
qtawesome<2,>=1.3[tutorial]extra == "tutorial"
-
qtawesome<2,>=1.3[all]extra == "all"
-
rapidocr-onnxruntime<2,>=1.3[papers]extra == "papers"
-
rdkit>=2023.3[chem]extra == "chem"
-
readlif[all]extra == "all"
-
readlif[lif]extra == "lif"
-
ruff<1,>=0.9[dev]extra == "dev"
-
s3fs>=2023.1[cloud]extra == "cloud"
-
samcell<2.0,>=1.2[samcell]extra == "samcell"
-
threadpoolctl<4,>=3.0[sweep]extra == "sweep"
-
timm<2.0,>=0.9[embeddings]extra == "embeddings"
-
tomli>=2.0[dev]python_version < "3.11" and extra == "dev"
-
torch-directml>=0.2[directml]platform_system == "Windows" and extra == "directml"
-
torchcam<1.0,>=0.4.0[attribution]extra == "attribution"
-
trackastra<1.0,>=0.5[all](python_version >= "3.10" and (sys_platform != "darwin" or platform_machine != "x86_64" or python_version < "3.13")) and extra == "all"
-
trackastra<1.0,>=0.5[trackastra](python_version >= "3.10" and (sys_platform != "darwin" or platform_machine != "x86_64" or python_version < "3.13")) and extra == "trackastra"
-
transformers<6,>=4.40[foundation]extra == "foundation"
-
ultrack<1.0,>=0.6[all](python_version >= "3.10" and python_version < "3.14" and (sys_platform != "darwin" or platform_machine != "x86_64" or python_version < "3.13")) and extra == "all"
-
ultrack<1.0,>=0.6[ultrack](python_version >= "3.10" and python_version < "3.14" and (sys_platform != "darwin" or platform_machine != "x86_64" or python_version < "3.13")) and extra == "ultrack"
-
ultralytics<9,>=8.0[plaque]extra == "plaque"
-
ultralytics<9,>=8.0[all]extra == "all"
-
ultralytics<9,>=8.4[papers]extra == "papers"
-
umap-learn<1.0,>=0.5.11[umap]extra == "umap"
-
vispy<1.0,>=0.14[fractal]extra == "fractal"
-
vispy<1.0,>=0.14[all]extra == "all"
-
win10toast>=0.9[tutorial]platform_system == "Windows" and extra == "tutorial"
-
win10toast>=0.9[all]platform_system == "Windows" and extra == "all"
-
win10toast>=0.9[qt]platform_system == "Windows" and extra == "qt"
-
xenon<1,>=0.9[dev]extra == "dev"
-
zarr<4,>=2.16[zarr]extra == "zarr"