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Morphological Profiling Python Packages

Python packages with the GitHub topic morphological-profiling. Sorted by monthly downloads, with stars and forks.
cytomining
pycytominer

Python package for image-based profiling

7K 144 43
EinarOlafsson
spacr

spaCR Spatial phenotype analysis of CRISPR–Cas9 screens (spaCR)

6K 8 1
edbiomedai
scmorph

Single-cell morphological analysis

2K 16 3
    • Original data from PyPI, GitHub, and OSV; downloads served through ClickHouse
    • Sources & methodology