Sequencing Python Packages

bioutils

provides common tools and lookup tables used primarily by the hgvs and uta packages

biocommons-seqrepo

non-redundant, compressed, journalled, file-based storage for biological sequences

galaxy-util

Data intensive science for everyone.

galaxy-tool-util

Data intensive science for everyone.

hgvs

Python library to parse, format, validate, normalize, and map sequence variants according to HGVS Nomenclature (https://hgvs-nomenclature.org/).

galaxy-tool-util-models

Data intensive science for everyone.

galaxy-containers

Data intensive science for everyone.

galaxy-objectstore

Data intensive science for everyone.

truvari

Structural variant toolkit for VCFs

galaxy-job-metrics

Data intensive science for everyone.

arda-mapper

High-throughput mapping and domain partitioning of antigen receptor sequences

pybcf

BCF reader

pyfastaq

Python3 scripts to manipulate FASTA and FASTQ files

galaxy-data

Data intensive science for everyone.

galaxy-app

Data intensive science for everyone.

galaxy-files

Data intensive science for everyone.

galaxy-web-framework

Data intensive science for everyone.

galaxy-job-execution

Data intensive science for everyone.

galaxy-web-stack

Data intensive science for everyone.

galaxy-schema

Data intensive science for everyone.

galaxy-tours

Data intensive science for everyone.

galaxy-auth

Data intensive science for everyone.

galaxy-config

Data intensive science for everyone.

galaxy-navigation

Data intensive science for everyone.