Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
Package Information
No reported malware or high/critical advisories · Details
The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- click >=8.1
- lightgbm >=4.5
- numpy >=1.26
- pandas >=2.2
- pyarrow >=16
- pydantic >=2.8
- pyhmmer >=0.10
- pyyaml >=6.0
- requests >=2.32
- scikit-learn >=1.5
- scipy >=1.13
- tqdm >=4.66
37 optional dependencies
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beautifulsoup4>=4.12[services]extra == "services"
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biopython>=1.84[dev]extra == "dev"
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biopython>=1.84[bio]extra == "bio"
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bridgernadesigner>=0.1.1[bridge]extra == "bridge"
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fastapi>=0.111[dev]extra == "dev"
-
fastapi>=0.111[server]extra == "server"
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fastmcp>=2.3[services]extra == "services"
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fastmcp>=2.3[dev]extra == "dev"
-
gymnasium>=0.29[dev]extra == "dev"
-
gymnasium>=0.29[env]extra == "env"
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httpx>=0.27[dev]extra == "dev"
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litellm>=1.44[services]extra == "services"
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mkdocs>=1.6[docs]extra == "docs"
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mkdocs-material>=9.5[docs]extra == "docs"
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paper-qa>=5.10[services]extra == "services"
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paramiko>=3.4[orchestrate]extra == "orchestrate"
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plotly>=5[services]extra == "services"
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pybedtools>=0.10[bio]extra == "bio"
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pybigwig>=0.3[bio]extra == "bio"
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pysam>=0.22[bridge]extra == "bridge"
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pysam>=0.22[bio]extra == "bio"
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pytest>=8[dev]extra == "dev"
-
pytest-cov>=5[dev]extra == "dev"
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python-dotenv>=1.0[orchestrate]extra == "orchestrate"
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rich>=13.7[orchestrate]extra == "orchestrate"
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ruff>=0.5[dev]extra == "dev"
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sbol3>=1.1[spec]extra == "spec"
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sbol3>=1.1[dev]extra == "dev"
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scp>=0.15[orchestrate]extra == "orchestrate"
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statsmodels>=0.14[models]extra == "models"
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streamlit>=1.37[services]extra == "services"
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torch>=2.3[models]extra == "models"
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uvicorn>=0.30[dev]extra == "dev"
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uvicorn>=0.30[server]extra == "server"
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viennarna>=2.6[bio]extra == "bio"
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viennarna>=2.6[bridge]extra == "bridge"
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xgboost>=2.1[models]extra == "models"