Open Science Python Packages

pynwb

A Python API for working with Neurodata stored in the NWB Format

geoh5py

Python API for geoh5, an open file format for geoscientific data.

earthaccess

Python Library for NASA Earthdata APIs

itk-core

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-filtering

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-numerics

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-io

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-segmentation

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-registration

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

pycbc

Core package to analyze gravitational-wave data, find signals, and study their parameters. This package was used in the first direct detection of gravitational waves (GW150914), and is used in the ongoing analysis of LIGO/Virgo data.

itkwasm

High performance spatial analysis in a web browser and across programming languages and hardware architectures

osfclient

A python library and command-line client for file storage on OSF

itkwasm-downsample

High performance spatial analysis in a web browser and across programming languages and hardware architectures

itkwasm-downsample-wasi

High performance spatial analysis in a web browser and across programming languages and hardware architectures

itkwidgets

An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.

calkit-python

That's a nice result you got there, but how did you calculate it?

simpeg

Simulation and Parameter Estimation in Geophysics - A python package for simulation and gradient based parameter estimation in the context of geophysical applications.

avogadro

Avogadro libraries provide 3D rendering, visualization, analysis and data processing useful in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.

calk9

That's a nice result you got there, but how did you calculate it?

moltemplate

A general cross-platform tool for preparing simulations of molecules and complex molecular assemblies

itkwasm-image-io

High performance spatial analysis in a web browser and across programming languages and hardware architectures

itkwasm-image-io-wasi

High performance spatial analysis in a web browser and across programming languages and hardware architectures

pvgeo

Geoscientific visualization tools for PyVista