PyRank

Open Science Python Packages

Python packages with the GitHub topic open-science. Sorted by monthly downloads, with stars and forks.
NeurodataWithoutBorders
pynwb

A Python API for working with Neurodata stored in the NWB Format

146K 225 98
InsightSoftwareConsortium
itk-core

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

111K 2K 750
InsightSoftwareConsortium
itk

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

111K 2K 750
InsightSoftwareConsortium
itk-numerics

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

110K 2K 750
InsightSoftwareConsortium
itk-filtering

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

110K 2K 750
InsightSoftwareConsortium
itk-io

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

106K 2K 750
InsightSoftwareConsortium
itk-segmentation

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

105K 2K 750
InsightSoftwareConsortium
itk-registration

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

101K 2K 750
earthaccess-dev
earthaccess

Python Library for NASA Earthdata APIs

81K 644 153
scitex-ai
scitex-dev

Dev tooling, linters & ecosystem auditor for SciTeX packages

43K 0 0
osfclient
osfclient

A python library and command-line client for file storage on OSF

41K 145 57
InsightSoftwareConsortium
itkwasm

High performance spatial analysis in a web browser and across programming languages and hardware architectures

40K 236 61
gwastro
pycbc

Core package to analyze gravitational-wave data, find signals, and study their parameters. This package was used in the first direct detection of gravitational waves (GW150914), and is used in the ongoing analysis of LIGO/Virgo data.

37K 389 389
InsightSoftwareConsortium
itkwasm-downsample

High performance spatial analysis in a web browser and across programming languages and hardware architectures

36K 236 61
InsightSoftwareConsortium
itkwasm-downsample-wasi

High performance spatial analysis in a web browser and across programming languages and hardware architectures

36K 236 61
scitex-ai
scitex-scholar

Scientific paper search, enrichment, download, and management

36K 6 1
ywatanabe1989
figrecipe

Reproducible matplotlib wrapper with mm-precision layouts

36K 1 2
ywatanabe1989
scitex-logging

Structured logging utilities for scientific workflows

35K 0 0
scitex-ai
scitex-io

Universal scientific data I/O with a plugin format registry

35K 0 4
ywatanabe1989
scitex-config

Configuration management with priority cascade: direct → yaml → env

35K 0 0
ywatanabe1989
newb

A fresh AI agent tries to use your package — if it succeeds, your docs work

34K 0 0
ywatanabe1989
scitex-app

Archived predecessor of scitex-sdk. App code is maintained in scitex_sdk.app.

34K 0 0
ywatanabe1989
scitex-ssh

SSH primitives (exec/copy/attach/tunnel) with per-host allowlist

34K 1 0
ywatanabe1989
scitex-context

Execution-context detection (script vs Jupyter vs IPython) + stream suppression

33K 0 0