Open Science Python Packages

geoh5py

Python API for geoh5, an open file format for geoscientific data.

pynwb

A Python API for working with Neurodata stored in the NWB Format

earthaccess

Python Library for NASA Earthdata APIs

itk-core

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-numerics

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-filtering

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-io

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-segmentation

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-registration

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

osfclient

A python library and command-line client for file storage on OSF

itkwasm

High performance spatial analysis in a web browser and across programming languages and hardware architectures

pycbc

Core package to analyze gravitational-wave data, find signals, and study their parameters. This package was used in the first direct detection of gravitational waves (GW150914), and is used in the ongoing analysis of LIGO/Virgo data.

itkwasm-downsample-wasi

High performance spatial analysis in a web browser and across programming languages and hardware architectures

itkwasm-downsample

High performance spatial analysis in a web browser and across programming languages and hardware architectures

pen-stack

Open infrastructure for genome writing: the Writable Genome (learned safe+durable insertion-site atlas), the Writer Atlas of 33k genome-writing enzymes, an inverse-design Write Planner, and a bridge-recombinase off-target engine. Consolidates 5 prior repos. Pre-registered, blind-validated, single install.

itkwidgets

An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.

calkit-python

Integrated, automated, accelerated research projects.

itkwasm-image-io

High performance spatial analysis in a web browser and across programming languages and hardware architectures

itkwasm-image-io-wasi

High performance spatial analysis in a web browser and across programming languages and hardware architectures

data-aggregator-mcp

Unified research-data acquisition MCP — search & fetch datasets across Zenodo, DataCite, NCBI omics (GEO/SRA/BioProject), and literature (PubMed/OpenAIRE) behind one normalized model.

simpeg

Simulation and Parameter Estimation in Geophysics - A python package for simulation and gradient based parameter estimation in the context of geophysical applications.

calk9

Integrated, automated, accelerated research projects.

avogadro

Avogadro libraries provide 3D rendering, visualization, analysis and data processing useful in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.