Artficial Intelligence Python Packages

afpropred

AfProPred: A tool to predict anti-freezing proteins

geometric-vector-perceptron

Implementation of Geometric Vector Perceptron, a simple circuit for 3d rotation equivariance for learning over large biomolecules, in Pytorch. Idea proposed and accepted at ICLR 2021

perceiver-ar-pytorch

Implementation of Perceiver AR, Deepmind's new long-context attention network based on Perceiver architecture, in Pytorch

the-compiler

Seed, Code, Harvest: Grow Your Own App with Tree of Thoughts!

pen-stack

A verification and grounding layer for AI-driven genome writing. Foundation models and a grounded co-scientist agent propose edits; PEN-STACK checks each against validated tools, never a language model: where a write is safe and durable, which enzyme makes it, and where it goes off-target. Calibrated, provenance-tracked, pre-registered.