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Cell Cell Communication Python Packages

Python packages with the GitHub topic cell-cell-communication. Sorted by relevance, with stars and monthly downloads.
saezlab
liana

LIANA+: an all-in-one framework for cell-cell communication

19K 287 33
StatBiomed
spatialdm

Spatial direct messaging detected by bivariate Moran

943 32 6
StatBiomed
finest

FineST: Fine-grained Spatial Transcriptomic

438 19 2
theislab
interscale

InterScale: multi-scale cellular interaction analysis model for spatial transcriptomics

370 7 0
theislab
ncem

ncem. Learning cell communication from spatial graphs of cells.

235 118 13
genecell
laris

LARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics

203 14 1
cafferychen777
edgemap

Python package for partitioning GWAS heritability into cell-intrinsic (node) and cell-cell communication (edge) components from spatial transcriptomics.

133 1 0
saezlab
liana-py

LIANA+: an all-in-one framework for cell-cell communication

2 287 33
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