Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
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The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- anndata >=0.9.1
- avitai-artifex >=0.1.10
- beartype >=0.14.1
- biopython >=1.81
- calibrax >=0.1.8
- chex >=0.1.7
- datarax >=0.1.13
- flax >=0.12.9
- h5py >=3.7
- jax >=0.11.1
- jax-md >=0.2.27
- jaxtyping >=0.2.20
- numpy >=1.24
- opifex >=0.2.7
- optax >=0.2.8
- scipy >=1.10
- substrax >=0.1.11
136 optional dependencies
-
bandit>=1.8.6[cuda-dev]extra == "cuda-dev"
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bandit>=1.8.6[all]extra == "all"
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bandit>=1.8.6[dev]extra == "dev"
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beartype>=0.14.1[all]extra == "all"
-
beartype>=0.14.1[test]extra == "test"
-
build>=1.0.3[all]extra == "all"
-
build>=1.0.3[dev]extra == "dev"
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build>=1.0.3[cuda-dev]extra == "cuda-dev"
-
coverage>=7[dev]extra == "dev"
-
coverage>=7[all]extra == "all"
-
coverage>=7[test]extra == "test"
-
coverage>=7[cuda-dev]extra == "cuda-dev"
-
datasets>=2.14[all]extra == "all"
-
datasets>=2.14[benchmark]extra == "benchmark"
-
deepchem>=2.8.0[benchmark]extra == "benchmark"
-
deepchem>=2.8.0[all]extra == "all"
-
flake8>=7.0[all]extra == "all"
-
flake8>=7.0[cuda-dev]extra == "cuda-dev"
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flake8>=7.0[dev]extra == "dev"
-
flake8-functions-names>=0.4[all]extra == "all"
-
flake8-functions-names>=0.4[dev]extra == "dev"
-
flake8-functions-names>=0.4[cuda-dev]extra == "cuda-dev"
-
griffe>=1.7.3[all]extra == "all"
-
griffe>=1.7.3[docs]extra == "docs"
-
import-linter>=2.5[all]extra == "all"
-
import-linter>=2.5[cuda-dev]extra == "cuda-dev"
-
import-linter>=2.5[dev]extra == "dev"
-
interrogate>=1.7.0[all]extra == "all"
-
interrogate>=1.7.0[dev]extra == "dev"
-
interrogate>=1.7.0[cuda-dev]extra == "cuda-dev"
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ipykernel>=6.29.5[cuda-dev]extra == "cuda-dev"
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ipykernel>=6.29.5[dev]extra == "dev"
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ipykernel>=6.29.5[all]extra == "all"
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jax>=0.11.1[cuda12]extra == "cuda12"
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jax>=0.11.1[all]extra == "all"
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jax>=0.11.1[cuda-dev]extra == "cuda-dev"
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jax-metal>=0.1.0[all](sys_platform == "darwin" and platform_machine == "arm64") and extra == "all"
-
jax-metal>=0.1.0[metal](sys_platform == "darwin" and platform_machine == "arm64") and extra == "metal"
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lineax>=0.0.8[soft-ops-ot]extra == "soft-ops-ot"
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lineax>=0.0.8[all]extra == "all"
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lineax>=0.0.8[soft-ops-advanced]extra == "soft-ops-advanced"
-
matplotlib>=3.7[all]extra == "all"
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matplotlib>=3.7[benchmark]extra == "benchmark"
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mkdocs>=1.6.1[docs]extra == "docs"
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mkdocs>=1.6.1[all]extra == "all"
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mkdocs-include-exclude-files>=0.1[all]extra == "all"
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mkdocs-include-exclude-files>=0.1[docs]extra == "docs"
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mkdocs-material>=9.6.7[docs]extra == "docs"
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mkdocs-material>=9.6.7[all]extra == "all"
-
mkdocstrings>=0.28.3[all]extra == "all"
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mkdocstrings>=0.28.3[docs]extra == "docs"
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mkdocstrings-python>=1.1.2[all]extra == "all"
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mkdocstrings-python>=1.1.2[docs]extra == "docs"
-
optimistix>=0.0.9[all]extra == "all"
-
optimistix>=0.0.9[soft-ops-advanced]extra == "soft-ops-advanced"
-
optimistix>=0.0.9[soft-ops-ot]extra == "soft-ops-ot"
-
ott-jax>=0.5.0[soft-ops-ot]extra == "soft-ops-ot"
-
ott-jax>=0.5.0[all]extra == "all"
-
pandas>=2.0[all]extra == "all"
-
pandas>=2.0[benchmark]extra == "benchmark"
-
pyfaidx>=0.8.0[genomics]extra == "genomics"
-
pyfaidx>=0.8.0[all]extra == "all"
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pylint>=3.3.8[cuda-dev]extra == "cuda-dev"
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pylint>=3.3.8[dev]extra == "dev"
-
pylint>=3.3.8[all]extra == "all"
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pymdown-extensions>=10.14.3[docs]extra == "docs"
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pymdown-extensions>=10.14.3[all]extra == "all"
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pynndescent>=0.5[benchmark]extra == "benchmark"
-
pynndescent>=0.5[all]extra == "all"
-
pyright>=1.1.336[dev]extra == "dev"
-
pyright>=1.1.336[all]extra == "all"
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pyright>=1.1.336[cuda-dev]extra == "cuda-dev"
-
pysam>=0.22.0[all]extra == "all"
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pysam>=0.22.0[genomics]extra == "genomics"
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pytest>=8.3.5[dev]extra == "dev"
-
pytest>=8.3.5[test]extra == "test"
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pytest>=8.3.5[all]extra == "all"
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pytest>=8.3.5[cuda-dev]extra == "cuda-dev"
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pytest-asyncio>=0.23[dev]extra == "dev"
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pytest-asyncio>=0.23[test]extra == "test"
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pytest-asyncio>=0.23[cuda-dev]extra == "cuda-dev"
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pytest-asyncio>=0.23[all]extra == "all"
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pytest-benchmark>=4[dev]extra == "dev"
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pytest-benchmark>=4[test]extra == "test"
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pytest-benchmark>=4[all]extra == "all"
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pytest-benchmark>=4[cuda-dev]extra == "cuda-dev"
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pytest-cov>=6.1.1[dev]extra == "dev"
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pytest-cov>=6.1.1[test]extra == "test"
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pytest-cov>=6.1.1[all]extra == "all"
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pytest-cov>=6.1.1[cuda-dev]extra == "cuda-dev"
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pytest-env>=1.0.1[dev]extra == "dev"
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pytest-env>=1.0.1[test]extra == "test"
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pytest-env>=1.0.1[all]extra == "all"
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pytest-env>=1.0.1[cuda-dev]extra == "cuda-dev"
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pytest-json-report>=1.5.0[dev]extra == "dev"
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pytest-json-report>=1.5.0[all]extra == "all"
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pytest-json-report>=1.5.0[cuda-dev]extra == "cuda-dev"
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pytest-randomly>=3.16.0[test]extra == "test"
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pytest-randomly>=3.16.0[dev]extra == "dev"
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pytest-randomly>=3.16.0[all]extra == "all"
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pytest-randomly>=3.16.0[cuda-dev]extra == "cuda-dev"
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pytest-timeout>=2.1[all]extra == "all"
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pytest-timeout>=2.1[cuda-dev]extra == "cuda-dev"
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pytest-timeout>=2.1[dev]extra == "dev"
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pytest-timeout>=2.1[test]extra == "test"
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pytest-xdist>=3.6[cuda-dev]extra == "cuda-dev"
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pytest-xdist>=3.6[all]extra == "all"
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pytest-xdist>=3.6[dev]extra == "dev"
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pytest-xdist>=3.6[test]extra == "test"
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python-dotenv>=1[dev]extra == "dev"
-
python-dotenv>=1[all]extra == "all"
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python-dotenv>=1[cuda-dev]extra == "cuda-dev"
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pyyaml>=6[test]extra == "test"
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pyyaml>=6[all]extra == "all"
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radon>=6.0.1[dev]extra == "dev"
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radon>=6.0.1[all]extra == "all"
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radon>=6.0.1[cuda-dev]extra == "cuda-dev"
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rdkit>=2025.9.3[chem]extra == "chem"
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rdkit>=2025.9.3[all]extra == "all"
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ruff>=0.1.5[all]extra == "all"
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ruff>=0.1.5[cuda-dev]extra == "cuda-dev"
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ruff>=0.1.5[dev]extra == "dev"
-
scib-metrics>=0.5[all]extra == "all"
-
scib-metrics>=0.5[benchmark]extra == "benchmark"
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shellcheck-py>=0.10.0.1[dev]extra == "dev"
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shellcheck-py>=0.10.0.1[cuda-dev]extra == "cuda-dev"
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shellcheck-py>=0.10.0.1[all]extra == "all"
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squidpy>=1.4[all]extra == "all"
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squidpy>=1.4[benchmark]extra == "benchmark"
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tabulate>=0.9[benchmark]extra == "benchmark"
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tabulate>=0.9[all]extra == "all"
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torch>=1.13.0[all]extra == "all"
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torch>=1.13.0[torch-io]extra == "torch-io"
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wemake-python-styleguide>=1.0[all]extra == "all"
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wemake-python-styleguide>=1.0[cuda-dev]extra == "cuda-dev"
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wemake-python-styleguide>=1.0[dev]extra == "dev"
Used By
- cellifex 552/mo