Rna Structure Python Packages

squarna

RNA secondary structure prediction tool

rna-tools

🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online

ostir

Open Source Transcription Initiation Rates

diffbio

End-to-end differentiable bioinformatics pipelines built on JAX/Flax NNX

barnaba

analyze nucleic acid 3D structures and MD trajectories

bialign

Bialignment of RNAs and proteins

artem-rna

Aligning RNA TErtiary Motifs (ARTEM) is a tool for superimposing arbitrary RNA spatial structures

seismic-graph

Plotting engine for SEISMIC-RNA

molprisma

Tool for fast inspection of PDB molecular files inside the terminal

predted

predTED — Fast approximate Tree Edit Distance (TED) prediction for RNA secondary structures using LightGBM. Up to 100x faster than exact TED computation.