Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
Package Information
No reported malware or high/critical advisories · Details
The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- anndata <0.12.0,>=0.8.0
- numpy >=1.21.0
- pandas <3.0.0,>=1.5.0
- polars >=0.19.0
- pybedtools >=0.9.0
- pysam >=0.21.0
- rich >=13.0.0
- scanpy >=1.9.0
- scipy >=1.10.0
- typer >=0.12.0
28 optional dependencies
-
bandit>=1.8.0[dev]extra == "dev"
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basedpyright>=1.18.0[dev]extra == "dev"
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build>=0.10[dev]extra == "dev"
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cyvcf2>=0.31.0[cyvcf2]extra == "cyvcf2"
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ipython>=8.0[docs]extra == "docs"
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matplotlib>=3.7.0[benchmark]extra == "benchmark"
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maturin>=1.0[rust]extra == "rust"
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maturin>=1.4[dev]extra == "dev"
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memory-profiler>=0.61[dev]extra == "dev"
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memory-profiler>=0.61[benchmark]extra == "benchmark"
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mypy>=1.0[dev]extra == "dev"
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myst-parser>=2.0[docs]extra == "docs"
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nbsphinx>=0.9[docs]extra == "docs"
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pgenlib>=0.90[plink]extra == "plink"
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pip-audit>=2.7.0[dev]extra == "dev"
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pre-commit>=3.0[dev]extra == "dev"
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pydata-sphinx-theme>=0.15[docs]extra == "docs"
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pytest>=7.0[dev]extra == "dev"
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pytest-benchmark>=4.0[benchmark]extra == "benchmark"
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pytest-benchmark>=4.0[dev]extra == "dev"
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pytest-cov>=4.0[dev]extra == "dev"
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ruff>=0.9.0[dev]extra == "dev"
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seaborn>=0.12.0[benchmark]extra == "benchmark"
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sphinx>=7.0[docs]extra == "docs"
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sphinx-autodoc-typehints>=1.25[docs]extra == "docs"
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sphinx-copybutton>=0.5[docs]extra == "docs"
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sphinx-design>=0.5[docs]extra == "docs"
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twine>=4.0[dev]extra == "dev"