Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
Package Information
No reported malware or high/critical advisories · Details
The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- anndata >=0.9
- igraph
- leidenalg
- matplotlib >=3.6
- numba >=0.57
- numpy >=1.22
- pandas >=1.5
- pot ==0.9.5
- pyyaml >=6.0
- scanpy >=1.9
- scikit-image >=0.20
- scikit-learn >=1.2
- scikit-misc
- scipy >=1.9
- seaborn >=0.12
- squidpy >=1.2
- statsmodels >=0.14.1
- tqdm >=4.64
25 optional dependencies
-
black[dev]extra == "dev"
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cellphonedb<6,>=5[cci]extra == "cci"
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gseapy[pathway]extra == "pathway"
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networkx[pathway]extra == "pathway"
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omicverse==1.7.5[cci]extra == "cci"
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omicverse==1.7.5[pathway]extra == "pathway"
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omicverse==1.7.5[trajectory]extra == "trajectory"
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pytest[dev]extra == "dev"
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pytest-cov[dev]extra == "dev"
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ruff[dev]extra == "dev"
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setuptools<81[trajectory]extra == "trajectory"
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setuptools<81[pathway]extra == "pathway"
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setuptools<81[cci]extra == "cci"
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spatialdata>=0.2[spatialdata]extra == "spatialdata"
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tacco==0.5.0[tacco]extra == "tacco"
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tomli[dev]python_version < "3.11" and extra == "dev"
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torch[trajectory]extra == "trajectory"
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torch[cci]extra == "cci"
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torch[pathway]extra == "pathway"
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torch-geometric[pathway]extra == "pathway"
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torch-geometric[trajectory]extra == "trajectory"
-
torch-geometric[cci]extra == "cci"
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transformers<5[cci]extra == "cci"
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transformers<5[pathway]extra == "pathway"
-
transformers<5[trajectory]extra == "trajectory"