Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
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The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- cellpose >=3.0.10
- dask <2024.11.12
- forestplot
- harmonypy
- imagecodecs
- kneed
- magicgui
- matplotlib
- napari
- napari-matplotlib >=3.0.0
- napari-spatialdata >=0.5.7
- numpy
- phenograph
- pycomplexheatmap
- pyometiff
- qtpy
- requests
- scanpy >=1.10.0
- scikit-image
- scikit-learn
- scikit-survival
- spatialdata >=0.5.0
- spatialdata-plot >=0.2.11
- squidpy
- xarray
21 optional dependencies
-
dask-cudf-cu12==24.10.*[gpu]extra == "gpu"
-
ipykernel[docs]extra == "docs"
-
ipython[docs]extra == "docs"
-
myst-nb>=1.1[docs]extra == "docs"
-
myst-parser[docs]extra == "docs"
-
napari[testing]extra == "testing"
-
pytest[testing]extra == "testing"
-
pytest-cov[testing]extra == "testing"
-
pytest-lazy-fixtures[testing]extra == "testing"
-
pytest-qt[testing]extra == "testing"
-
qtpy[testing]extra == "testing"
-
rapids-singlecell[gpu]extra == "gpu"
-
sphinx>=4[docs]extra == "docs"
-
sphinx-autodoc-typehints[docs]extra == "docs"
-
sphinx-book-theme>=1[docs]extra == "docs"
-
sphinx-copybutton[docs]extra == "docs"
-
sphinx-qt-documentation[docs]extra == "docs"
-
sphinx-tabs[docs]extra == "docs"
-
sphinxcontrib-bibtex>=1[docs]extra == "docs"
-
sphinxext-opengraph[docs]extra == "docs"
-
tox[testing]extra == "testing"