Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
Package Information
No reported malware or high/critical advisories · Details
The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- appdirs
-
bg-atlasapi
python_version < "3.9"
-
brainglobe-atlasapi
python_version >= "3.9"
-
dataclasses
python_version < "3.7"
- imagecodecs
-
importlib-metadata
>=1.0
python_version < "3.8"
- matplotlib !=3.3.0,!=3.3.1
- pandas
- pyyaml
- scikit-image
- tifffile
- typing-extensions
46 optional dependencies
-
awscli[aws]extra == "aws"
-
awscli[all]extra == "all"
-
bash-kernel[all]extra == "all"
-
bash-kernel[jupyter]extra == "jupyter"
-
boto3[aws]extra == "aws"
-
boto3[all]extra == "all"
-
furo[docs]extra == "docs"
-
itk-elastix==0.20[all]extra == "all"
-
itk-elastix==0.20[itk]extra == "itk"
-
itk-elastix==0.20[most]extra == "most"
-
javabridge==1.0.19.post4+gbebed64[all]python_version < "3.8" and extra == "all"
-
javabridge==1.0.19.post4+gbebed64[import]python_version < "3.8" and extra == "import"
-
javabridge==1.0.19.post4+gbebed64[most]python_version < "3.8" and extra == "most"
-
jinja2[all]extra == "all"
-
jinja2[pandas-plus]extra == "pandas-plus"
-
jupyterlab[jupyter]extra == "jupyter"
-
jupyterlab[all]extra == "all"
-
matplotlib-scalebar[most]extra == "most"
-
matplotlib-scalebar[all]extra == "all"
-
mayavi[3d]extra == "3d"
-
mayavi[all]extra == "all"
-
myst-parser[docs]extra == "docs"
-
openpyxl[all]extra == "all"
-
openpyxl[pandas-plus]extra == "pandas-plus"
-
pyamg[most]extra == "most"
-
pyamg[all]extra == "all"
-
pyface[all]extra == "all"
-
pyface[gui]extra == "gui"
-
pyface[most]extra == "most"
-
pyqt5!=5.15.8[all]extra == "all"
-
pyqt5!=5.15.8[most]extra == "most"
-
pyqt5!=5.15.8[gui]extra == "gui"
-
python-bioformats==4.0.5.post2+g51eb88a[import]python_version < "3.8" and extra == "import"
-
python-bioformats==4.0.5.post2+g51eb88a[all]python_version < "3.8" and extra == "all"
-
python-bioformats==4.0.5.post2+g51eb88a[most]python_version < "3.8" and extra == "most"
-
scikit-learn[all]extra == "all"
-
seaborn[all]extra == "all"
-
simpleitk==2.0.2rc2.dev785+g8ac4f[simplitk]python_version < "3.8" and extra == "simplitk"
-
sphinx[docs]extra == "docs"
-
sphinx-autodoc-typehints[docs]extra == "docs"
-
tensorflow[classifier]extra == "classifier"
-
traitsui[most]extra == "most"
-
traitsui[all]extra == "all"
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traitsui[gui]extra == "gui"
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vtk<9.3.0[3d]extra == "3d"
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vtk<9.3.0[all]extra == "all"