Microscopy Image Analysis Python Packages

napari-tmidas

Automated batch processing of cell and tissue microscopy image data in Napari

napari-nuclephaser

A Napari plugin for automated cell nuclei detection, cell proliferation & population growth analysis, and single-cell tracking in brightfield and fluorescence microscopy images

bio-blindspot

An automated pipeline for the reproducible blinding of image data

magellanmapper

MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification

htsimaging

🔬Python package for high-throughput single-cell imaging analysis.