Atlas Python Packages

xatlas

Python bindings for xatlas

stare

Python library and CLI for the CERN ATLAS Glance/Fence API

aignostics

🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library.

analysisg

A project which aims to abstract the analysis pipeline of a Particle Physics Analysis at ATLAS.

voxcell

Voxcell is a small library to handle probability distributions that have a spatial component and to use them to build collection of cells in space.

siibra

Software interfaces for interacting with brain atlases - Python client

apache-atlas

Apache Atlas - Open Metadata Management and Governance capabilities across the Hadoop platform and beyond

pyatlasclient

Apache Atlas Python Client

atlascli

Python API for the MongoDB Atlas API

pybar

Bonn ATLAS Readout in Python - A readout software for FEI4 pixel detectors

brainglobe-heatmap

Rendering anatomical heatmaps with brainrender and matplotlib

cobra-policytool

Manage Apache Atlas and Ranger configuration for your Hadoop environment.

mongodbatlas

Python API for the MongoDB Atlas API

atlas-commons

Library containing common functions to build atlases

atlas-direction-vectors

Tools to compute direction vectors in the context of brain atlases.

atlasplots

ATLAS Plots provides a simple interface to produce plots in ROOT following the standard ATLAS style guidelines.

blue-brain-token-fetch

Package to perform fetching and automatic refreshing of the Nexus access token using Keycloak. Using the CLI you can choose to either have its value periodically written in the file whose path is given in input or either have it periodically printed on the console output.

birdbrain

A library for viewing songbird brain atlases (European starling, Canary, Zebra finch, Pigeon, Mustached bat)

atlas-sdk

Python SDK to interact with atlas

atlas-densities

Tools to compute densities in the context of brain atlases.

mapqc

MapQC - a metric for the evaluation of single-cell query-to-reference mappings

pluploader

CLI Confluence/Jira Plugin uploader

pyatlas

OSM in memory

blue-brain-atlas-pipeline

Set of processing modules that generate annotation volumes, brain region hierarchies, direction vectors, orientations and placement hints, cell density volumes for several cell types, CellComposition of the brain regions.