Umap Python Packages

umap-learn

Uniform Manifold Approximation and Projection

ellama

Embeddings interface for Ollama

torchdr

TorchDR - PyTorch Dimensionality Reduction

ilayoutx

Graph layout algorithms in Rust/Python

scarf

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

simpletopicmodel

An NLP Package for generating Topic Models

mepylome

Python package for processing Infinum DNA methylation arrays

dire-rapids

DiRe accelerated by PyTorch, PyKeOps and cuVS

embeddings2image

create "Karpathy's style" 2d images out of your image embeddings

umato

Uniform Manifold Approximation with Two-phase Optimization (IEEE VIS 2022 short)

mlx-vis

Pure MLX implementations of UMAP, t-SNE, PaCMAP, TriMap, DREAMS, CNE, MMAE, and NNDescent for Apple Silicon. Metal GPU for computation and video rendering.

dbmap

dbMAP: diffusion metrics, graphs and layouts for machine-learning

knrscore

KNRScore is a Python package for computing K-Nearest-Rank Similarity, a metric that quantifies local structural similarity between two maps or embeddings.

dire-jax

A JAX-based Dimension Reducer

usum

USUM: Plotting sequence similarity using USEARCH & UMAP

lensed-umap

Untangle UMAP with filters.

umapjax

UMAP, but accelerated.

drift-lens-monitor

Your metrics lie. Your embeddings don't. Detect embedding space drift before accuracy drops.

umap-learn-no-tf

Uniform Manifold Approximation and Projection

dimensionality-reduction-package

Python package for plug and play dimensionality reduction techniques and data visualization in 2D or 3D.

raccoon-cluster

Multi-scale clustering in Python

scarf-toolkit

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.