Umap Python Packages

umap-learn

Uniform Manifold Approximation and Projection

mepylome

Python toolkit for parsing, processing, and analysis of Illumina methylation array IDAT files

ilayoutx

Graph layout algorithms in Rust/Python

torchdr

TorchDR - PyTorch Dimensionality Reduction

lakshana

Zero-config schema discovery for document collections. Drop a folder of PDFs, get a JSON Schema.

imbed

Tools to work with embeddings

simpletopicmodel

Easily identifying themes in text

scarf

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

ellama

Embeddings interface for Ollama

embeddings2image

create "Karpathy's style" 2d images out of your image embeddings

mlx-vis

Pure MLX implementations of UMAP, t-SNE, PaCMAP, TriMap, DREAMS, CNE, MMAE, and NNDescent for Apple Silicon. Metal GPU for computation and video rendering.

hddflyzer

Traceable, reproducible molecular descriptor-space workflows for CLI and Python.

topometry-nosc

An independently maintained, heavily modified fork of TopOMetry: geometry-first topological dimensionality reduction and manifold learning.

dire-rapids

DiRe accelerated by PyTorch, PyKeOps and cuVS

umato

Python Implementation of UMATO (Uniform Manifold Approximation with Two-Phase Optimization)

dire-jax

A JAX-based Dimension Reducer

dbmap

dbMAP: diffusion metrics, graphs and layouts for machine-learning

knrscore

KNRScore is a Python package for computing K-Nearest-Rank Similarity, a metric that quantifies local structural similarity between two maps or embeddings.

lensed-umap

Untangle UMAP with filters.

umapjax

UMAP, but accelerated.

usum

USUM: Plotting sequence similarity using USEARCH & UMAP & t-SNE

umap-learn-no-tf

Uniform Manifold Approximation and Projection

drift-lens-monitor

Your metrics lie. Your embeddings don't. Detect embedding space drift before accuracy drops.

dimensionality-reduction-package

No description available