Topological Data Analysis Python Packages

umap-learn

Uniform Manifold Approximation and Projection

ripser

A Lean Persistent Homology Library for Python

gudhi

The GUDHI library is a generic open source C++ library, with a Python interface, for Topological Data Analysis (TDA) and Higher Dimensional Geometry Understanding.

cripser

Persistent homology calculation for 1D (scalar time series), 2D (image), and 3D, 4D (voxel) arrays

multipers

Python library for multiparameter persistence

giotto-tda

A high-performance topological machine learning toolbox in Python

pyflagser

Python bindings and API for the flagser C++ library (https://github.com/luetge/flagser).

giotto-ph

High performance implementation of Vietoris-Rips persistence.

tadasets

Synthetic data sets apt for Topological Data Analysis

scikit-tda

Topological Data Analysis for Python🐍

tda

Python package for topological data analysis written in Rust. Not limited to just H0 and H1.

giotto-tda-nightly

A high-performance topological machine learning toolbox in Python

findpeaks

The detection of peaks and valleys in a 1d-vector or 2d-array (image)

toponetx

Computing on Topological Domains

teaspoon

A Topological Signal Processing Package

lophat

Lockfree Persistent Homology Algorithm Toolkit

pervect

Vectorization of persistence diagrams and approximate Wasserstein distance

torch-topological

A topological machine learning framework based on PyTorch

cereeberus

A Python package for Reeb graphs

tda-mapper

A simple and efficient Python implementation of Mapper algorithm for Topological Data Analysis

giotto-learn

A high-performance topological machine learning toolbox in Python

mantra-dataset

MANTRA: The Manifold Triangulations Assemblage (A dataset of manifold triangulations)

tda-repr

Topological and spectral analysis toolkit for neural network representations.

topomodelx

Topological Deep Learning