Topological Data Analysis Python Packages

umap-learn

Uniform Manifold Approximation and Projection

gudhi

The GUDHI library is a generic open source C++ library, with a Python interface, for Topological Data Analysis (TDA) and Higher Dimensional Geometry Understanding.

ripser

A Lean Persistent Homology Library for Python

cripser

Persistent homology calculation for 1D (scalar time series), 2D (image), and 3D, 4D (voxel) arrays

multipers

Python library for multiparameter persistence

lophat

Lockfree Persistent Homology Algorithm Toolkit

pyflagser

Python bindings and API for the flagser C++ library (https://github.com/luetge/flagser).

giotto-tda

A high-performance topological machine learning toolbox in Python

giotto-ph

High performance implementation of Vietoris-Rips persistence.

cereeberus

A python package for the interleaving distance on Reeb graphs and related structures from TDA

findpeaks

The detection of peaks and valleys in a 1d-vector or 2d-array (image)

giotto-tda-nightly

A high-performance topological machine learning toolbox in Python

teaspoon

Topological Signal Processing in Python

tda

Python package for topological data analysis written in Rust. Not limited to just H0 and H1.

tda-mapper

A simple and efficient Python implementation of Mapper algorithm for Topological Data Analysis

toponetx

Computing on Topological Domains

tadasets

Synthetic data sets apt for Topological Data Analysis

pytomato

A pure-Python implementation of the ToMATo clustering algorithm.

persistable-clustering

density-based clustering for exploratory data analysis based on multi-parameter persistence

pyflasc

A Python implementation of Flare-Sensitive Clustering (FLASC) based on HDBSCAN*.

scikit-tda

Topological Data Analysis for Python🐍

chromatic-tda

Tool to compute six-packs of persistence diagrams for chromatic point clouds [packaged on PyPI]

torch-topological

A topological machine learning framework based on PyTorch

giotto-learn

A high-performance topological machine learning toolbox in Python