Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
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The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- anndata >=0.10
- datasets <5,>=2.18
- leidenalg >=0.9
- matplotlib >=3.6
- numpy >=1.23
- pandas >=1.5
- peft >=0.10
- pyensembl >=2.2
- pyyaml >=6.0
- requests >=2.28
- scanpy >=1.9
- scib-metrics >=0.5
- scikit-learn >=1.1
- scikit-misc >=0.3
- scipy >=1.9
- session-info >=1.0
- setuptools <81
- squidpy >=1.4
- torch >=2.1
- tqdm >=4.64
- transformers >=4.44
25 optional dependencies
-
cellphonedb[eval]extra == "eval"
-
coverage[test]extra == "test"
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docutils!=0.18.*,!=0.19.*,>=0.8[doc]extra == "doc"
-
gdown[notebook]extra == "notebook"
-
geomloss>=0.2.6[perturb]extra == "perturb"
-
huggingface-hub>=0.20[hub]extra == "hub"
-
ipykernel>=6[notebook]extra == "notebook"
-
ipykernel[doc]extra == "doc"
-
ipython[doc]extra == "doc"
-
ipython[eval]extra == "eval"
-
jupyterlab>=4[notebook]extra == "notebook"
-
myst-nb[doc]extra == "doc"
-
omnipath[eval]extra == "eval"
-
pandas[doc]extra == "doc"
-
pre-commit[dev]extra == "dev"
-
pytest[test]extra == "test"
-
sphinx>=4[doc]extra == "doc"
-
sphinx-autodoc-typehints[doc]extra == "doc"
-
sphinx-book-theme>=1.0.0[doc]extra == "doc"
-
sphinx-copybutton[doc]extra == "doc"
-
sphinx-design[doc]extra == "doc"
-
sphinxcontrib-bibtex>=1.0.0[doc]extra == "doc"
-
sphinxext-opengraph[doc]extra == "doc"
-
twine>=4.0.2[dev]extra == "dev"
-
wandb>=0.16[train]extra == "train"