Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
Package Information
No reported malware or high/critical advisories · Details
The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- click >=8.0
- genome-atlas <0.8.0,>=0.7.2
- joblib >=1.3
- mech-class <0.6.0,>=0.5.4
- numpy >=1.24
- pandas >=2.0
- pen-assemble <0.6.0,>=0.5.2
- pen-score <0.2.0,>=0.1.3
- pyarrow >=14.0
- pydantic >=2.5
- pyyaml >=6.0
- scikit-learn >=1.3
- scipy >=1.10
- tqdm >=4.66
20 optional dependencies
-
biopython>=1.83[literature]extra == "literature"
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chromadb>=0.4.20[rag]extra == "rag"
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matplotlib>=3.8[webserver]extra == "webserver"
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mypy>=1.8[dev]extra == "dev"
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myst-parser>=2.0[docs]extra == "docs"
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ollama>=0.1.7[rag]extra == "rag"
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pen-compare[everything]extra == "everything"
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pen-compare[all-papers]extra == "all-papers"
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plotly>=5.18[webserver]extra == "webserver"
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pre-commit>=3.5[dev]extra == "dev"
-
pytest>=7.4[dev]extra == "dev"
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pytest-asyncio>=0.23[dev]extra == "dev"
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pytest-cov>=4.1[dev]extra == "dev"
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requests>=2.31[rag]extra == "rag"
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ruff>=0.4[dev]extra == "dev"
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sentence-transformers>=2.5[rag]extra == "rag"
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sphinx>=7.2[docs]extra == "docs"
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sphinx-copybutton>=0.5[docs]extra == "docs"
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sphinx-rtd-theme>=2.0[docs]extra == "docs"
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streamlit>=1.32[webserver]extra == "webserver"