Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
Package Information
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Dependencies
- anndata >=0.8
- astropy >=5.2
- bioio >=1.0.1
- bioio-base !=1.0.5,!=1.0.6
- bioio-czi
- bioio-ome-tiff
- bioio-ome-zarr
- bioio-tifffile
- boto3
- edt >=3.0.0
- einops >=0.6.1
- fire >=0.5
- hydra-colorlog >=1.2
- hydra-core ~=1.3.0
- hydra-optuna-sweeper >=1.2
- lightning >=2.0
- matplotlib >=3.7
- mlflow >=2.1
- monai >=1.4
- numpy >=1.23
- ome-zarr >=0.6
- omegaconf >=2.3
- online-stats >=2023
- opencv-python >=4.10.0
- pandas >=1.5
- positional-encodings >=6.0.3
- pyarrow >=10.0
- pyrootutils >=1.0
- pyyaml >=6.0
- rich
- scikit-learn >=1.2
- tifffile <2025.2.18,>=2024.0.0
- timm >=0.9.7
- torch ~=2.0.0
- tqdm >=4.64
- universal-pathlib >=0.0
26 optional dependencies
-
aicscytoparam~=0.1[spharm]extra == "spharm"
-
aicsshparam>=0.1.7[pcloud]extra == "pcloud"
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boto3<1.24.5,>=1.23.5[s3]extra == "s3"
-
cyto-dl[all]extra == "all"
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cyto-dl[test]extra == "test"
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cyto-dl[docs]extra == "docs"
-
e3nn~=0.5.1[equiv]extra == "equiv"
-
escnn~=1.0.7[equiv]extra == "equiv"
-
furo<=2023.3.23[docs]extra == "docs"
-
geomloss>=0.2.6[pcloud]extra == "pcloud"
-
gorilla>=0.4.0[torchserve]extra == "torchserve"
-
lie-learn==0.0.1.post1[equiv]extra == "equiv"
-
m2r2<=0.3.3.post2[docs]extra == "docs"
-
ninja>=1.11.1[pcloud]extra == "pcloud"
-
point-cloud-utils>=0.29.6[pcloud]extra == "pcloud"
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py3nj>=0.2.1[equiv]extra == "equiv"
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pyntcloud>=0.3.1[pcloud]extra == "pcloud"
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pyshtools==4.10.3[spharm]extra == "spharm"
-
pytest~=7.2[test]extra == "test"
-
pytest-cov~=4.0[test]extra == "test"
-
s3fs~=2023.1[s3]extra == "s3"
-
sphinx<=6.1.3[docs]extra == "docs"
-
torch-geometric>=2.3.1[pcloud]extra == "pcloud"
-
torchio>=0.19.1[pcloud]extra == "pcloud"
-
torchserve>=0.8.0[torchserve]extra == "torchserve"
-
vtk~=9.2[spharm]extra == "spharm"
Used By
- allencell-segmenter-ml 756/mo