Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
Package Information
No reported malware or high/critical advisories · Details
The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- click <9,>=8.1.7
- numcodecs <0.16,>=0.12
- numpy <2,>=1.26
- oxbow ==0.5.1
- pandas <2.3,>=2.2.3
- polars ==1.36.1
- pyahocorasick ==2.1.0
- pyarrow ==21.0.0
- pybigwig >=0.3.22
- pyfaidx ==0.8.1.1
- pyranges ==0.0.129
- pysam ==0.22.1
- setuptools <70
- zarr <4,>=3.1
20 optional dependencies
-
black>=24.0[dev]extra == "dev"
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build>=1.2[dev]extra == "dev"
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bump2version>=1.0[dev]extra == "dev"
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jinja2==3.1.4[viz]extra == "viz"
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matplotlib==3.9.0[viz]extra == "viz"
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memory-profiler==0.61.0[perf]extra == "perf"
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mypy>=1.10[dev]extra == "dev"
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numcodecs<0.16,>=0.12[zarr]extra == "zarr"
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oxbow==0.5.1[fastbam]extra == "fastbam"
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plotly==5.22.0[viz]extra == "viz"
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psutil>=5.9[perf]extra == "perf"
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pybigwig>=0.3.22[bigwig]extra == "bigwig"
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pytest==8.2.0[dev]extra == "dev"
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pytest-cov>=5.0[dev]extra == "dev"
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pytest-xdist>=3.5[dev]extra == "dev"
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ruff>=0.6[dev]extra == "dev"
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scipy>=1.11[cluster]extra == "cluster"
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translonscorer[full]extra == "full"
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twine>=5.0[dev]extra == "dev"
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zarr<4,>=3.1[zarr]extra == "zarr"