Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
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Dependencies
- arviz >=0.21.0
- beartype >=0.20.0
- diffrax >=0.6.1
- einops >=0.8.1
- funsor >=0.4.5
- h5py >=3.13.0
- igraph >=0.11.8
-
jax
>=0.4.35
platform_system != "Linux" or platform_machine != "x86_64"
- jaxtyping >=0.2.36
- leidenalg >=0.10.2
- matplotlib >=3.10.1
- numpy >=2.1.3
- numpyro >=0.18.0
- optax >=0.2.4
- pandas >=2.2.3
- pythran >=0.16.1
- rich >=13.9.4
- scanpy >=1.11.0
- scipy >=1.15.2
- scvi-tools >=1.2.2
- torch >=2.4.0
- xarray >=2025.1.2
5 optional dependencies
-
gtfparse[preprocessing]extra == "preprocessing"
-
harmonypy>=0.0.10[preprocessing]extra == "preprocessing"
-
pybiomart>=0.2.0[preprocessing]extra == "preprocessing"
-
pyranges>=0.1.4[preprocessing]extra == "preprocessing"
-
tangermeme>=0.4.0[preprocessing]extra == "preprocessing"