differential-expression
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
Single-cell perturbation analysis
pseudobulking on an AnnData object
Traceable omics benchmarks with multi-method matrices, regression gates, portable bundles and sequence tools.
Python port of R limma for differential expression analysis
Lightweight GPU-only Mann–Whitney U differential expression for single-cell CRISPR perturbation screens
Differential analysis of targeted Isotope-labeled Metabolomics data
Curare - A customizable and reproducible analysis pipeline for RNA-Seq experiments
Causal inference, differential expression, and co-expression for scRNA-seq
Integrated Differential Expression and Annotation
Rosetta Stone between R and Python for bio
A robust model for quantitative comparison of ChIP-Seq data sets.
An auditor of pseudoreplication in single-cell RNA-seq differential expression. Phase 0: pre-registered measurement study.
Python pipeline for Nanostring nCounter gene expression analysis — parse, QC, normalize, DE, pathway scoring
Differential expression across the genome
Transcriptiome Analysis in Python Imported from R
