Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
Package Information
No reported malware or high/critical advisories · Details
The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- click <9.0.0,>=8.0.0
- fsspec >=2024.12.0
- igraph
- jinja2
- matplotlib <4.0.0,>=3.5.0
- mygene <4.0.0,>=3.0.0
- numpy <3.0.0,>=1.24.0
- pandas <3.0.0,>=1.5.0
- pyarrow <20.0.0,>=15.0.0
- pydantic <3.0.0,>=2.0.0
- pyyaml <7.0.0,>=6.0.0
- requests >=2.25.0
- rich >=13.0.0
- scipy <2.0.0,>=1.10.0
- tqdm
- zeep <4.0.0,>=3.0.0
27 optional dependencies
-
anndata[genomics]extra == "genomics"
-
anthropic<1.0,>=0.73.0[mcp]extra == "mcp"
-
beautifulsoup4<5.0.0,>=4.11.0[etl]extra == "etl"
-
beautifulsoup4<5.0.0,>=4.11.0[mcp]extra == "mcp"
-
black>=26.0.0[dev]extra == "dev"
-
chromadb<1.0.0,>=0.4.15[mcp]extra == "mcp"
-
fastmcp<3.0.0,>=2.13.0[mcp]extra == "mcp"
-
gseapy[genomics]extra == "genomics"
-
httpx>=0.24.0[mcp]extra == "mcp"
-
ipykernel[dev]extra == "dev"
-
jupyter-client>=7.0.0[mcp]extra == "mcp"
-
markdown>=3.4.0[mcp]extra == "mcp"
-
mcp<2.0.0,>=1.0.0[mcp]extra == "mcp"
-
mudata[genomics]extra == "genomics"
-
napistu[dev]extra == "dev"
-
nbformat>=5.0.0[mcp]extra == "mcp"
-
omnipath[etl]extra == "etl"
-
pre-commit<4.0.0,>=3.0.0[dev]extra == "dev"
-
pytest<8.0.0,>=7.0.0[dev]extra == "dev"
-
pytest-asyncio[dev]extra == "dev"
-
pytest-cov[dev]extra == "dev"
-
python-libsbml[etl]extra == "etl"
-
rpy2<4.0.0,>=3.5.0[rpy2]extra == "rpy2"
-
rpy2-arrow<1.0.0,>=0.1.0[rpy2]extra == "rpy2"
-
ruff[dev]extra == "dev"
-
sentence-transformers<3.0.0,>=2.2.0[mcp]extra == "mcp"
-
statsmodels[genomics]extra == "genomics"
Used By
- napistu-torch 959/mo