Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
Package Information
No reported malware or high/critical advisories · Details
The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- anndata >=0.12
- matplotlib >=3.7
- mudata >=0.2.3
- networkx >=3.0
- numpy >=2.1
- pandas <3.0,>=2.0
- pooch >=1.6
- pyarrow >=14.0
- pybiomart >=0.2
- pyfaidx >=0.9
- requests >=2.28
- scanpy >=1.11
- scikit-learn >=1.2
- scipy >=1.14
- seaborn >=0.12
- torch >=2.6
- torch-geometric >=2.7
- tqdm >=4.65
22 optional dependencies
-
debugpy[test]extra == "test"
-
docutils!=0.18.*,!=0.19.*,>=0.8[doc]extra == "doc"
-
enformer-pytorch>=0.8.12[doc]extra == "doc"
-
enformer-pytorch>=0.8.12[enformer]extra == "enformer"
-
enformer-pytorch>=0.8.12[test]extra == "test"
-
ipykernel[doc]extra == "doc"
-
ipython[doc]extra == "doc"
-
ipywidgets[doc]extra == "doc"
-
myst-nb>=1.1[doc]extra == "doc"
-
pandas[doc]extra == "doc"
-
pre-commit>=3.0[dev]extra == "dev"
-
pytest>=7.0[test]extra == "test"
-
ruff>=0.1.0[dev]extra == "dev"
-
setuptools[doc]extra == "doc"
-
sphinx>=8.1[doc]extra == "doc"
-
sphinx-autodoc-typehints[doc]extra == "doc"
-
sphinx-book-theme>=1[doc]extra == "doc"
-
sphinx-copybutton[doc]extra == "doc"
-
sphinx-tabs[doc]extra == "doc"
-
sphinxcontrib-bibtex>=1[doc]extra == "doc"
-
sphinxext-opengraph[doc]extra == "doc"
-
twine>=4.0[dev]extra == "dev"