Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
Package Information
No reported malware or high/critical advisories · Details
The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- click <=8.2.0
- cookiecutter <=2.1.1
- loguru <=0.7.2
- more-itertools
- numpy <=1.26.4
- pandas <=2.1.2
- polars <=1.6.0
- pulp <2.8.0
- pyarrow
- pybedtools
- pyranges <=0.1.2
- snakemake <=7.32.4
- snakemake-wrapper-utils
36 optional dependencies
-
capcruncher-tools>=0.2.0[full]extra == "full"
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click<=8.2.0[full]extra == "full"
-
cookiecutter<=2.1.1[full]extra == "full"
-
cooler<=0.10.3[full]extra == "full"
-
h5py[full]extra == "full"
-
ibis-framework<=8.0.0,>6.1.0[full]extra == "full"
-
loguru<=0.7.2[full]extra == "full"
-
matplotlib<3.9.0,>=3.8.4[full]extra == "full"
-
more-itertools[full]extra == "full"
-
multiqc[full]extra == "full"
-
numpy<=1.26.4[full]extra == "full"
-
pandas<=2.1.2[full]extra == "full"
-
pandera<=0.22.1[full]extra == "full"
-
panel<=1.3.0[full]extra == "full"
-
papermill[full]extra == "full"
-
plotly<=5.18.0,>5.0.0[full]extra == "full"
-
polars<=1.6.0[full]extra == "full"
-
pulp<2.8.0[full]extra == "full"
-
pyarrow<15.0.0,>11.0.0[full]extra == "full"
-
pybedtools<=0.9.1[full]extra == "full"
-
pydantic<2.11.0,>2.4.0[full]extra == "full"
-
pydeseq2[full]extra == "full"
-
pyranges<=0.1.2[full]extra == "full"
-
pysam<=0.21.0,>0.15.0[full]extra == "full"
-
quarto[full]extra == "full"
-
ray>=2.8.0[full]extra == "full"
-
seaborn<=0.12.2[full]extra == "full"
-
snakemake<=7.32.4[full]extra == "full"
-
snakemake-wrapper-utils[full]extra == "full"
-
toml[full]extra == "full"
-
tqdm<=4.65.0[full]extra == "full"
-
trackhub<=0.2.4[full]extra == "full"
-
tracknado[full]extra == "full"
-
ujson<=5.8.0[full]extra == "full"
-
xopen[full]extra == "full"
-
xxhash<=3.4.1[full]extra == "full"