Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
Package Information
No reported malware or high/critical advisories · Details
The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- alphabase >=1.5.0
- alphadia-search-rs <2,>=1.4.0
- alpharaw >=0.6.0
- argparse
- directlfq >=0.2.19
-
llvmlite
<0.46.0
sys_platform == "darwin" and platform_machine == "x86_64"
- matplotlib
- numpy <2
- pandas <3
- peptdeep >=1.4.1
- pyarrow >=20.0.0
- quantselect >=0.1.3
- rocket-fft
- scipy ==1.12.0
- torchmetrics
- transformers
- xxhash
113 optional dependencies
-
alphabase==1.9.1[stable]extra == "stable"
-
alphadia-search-rs==1.4.0[stable]extra == "stable"
-
alpharaw==0.7.1[stable]extra == "stable"
-
argparse==1.4.0[stable]extra == "stable"
-
backports-zstd==1.6.0[stable]extra == "stable"
-
biopython==1.88[stable]extra == "stable"
-
certifi==2026.7.22[stable]extra == "stable"
-
cffi==2.1.1[stable]extra == "stable"
-
charset-normalizer==3.5.0[stable]extra == "stable"
-
click==8.4.2[stable]extra == "stable"
-
clr-loader==0.3.1[stable]extra == "stable"
-
contextlib2==21.6.0[stable]extra == "stable"
-
contourpy==1.3.3[stable]extra == "stable"
-
coverage[development]extra == "development"
-
coverage[tests]extra == "tests"
-
coverage-badge[development]extra == "development"
-
coverage-badge[tests]extra == "tests"
-
cycler==0.12.1[stable]extra == "stable"
-
dill==0.4.1[stable]extra == "stable"
-
directlfq==0.3.3[stable]extra == "stable"
-
et-xmlfile==2.0.0[stable]extra == "stable"
-
filelock==3.32.2[stable]extra == "stable"
-
fonttools==4.63.0[stable]extra == "stable"
-
fsspec==2026.7.0[stable]extra == "stable"
-
furo[development]extra == "development"
-
furo[docs]extra == "docs"
-
h5py==3.16.0[stable]extra == "stable"
-
hf-xet==1.6.0[stable]extra == "stable"
-
huggingface-hub==0.36.2[stable]extra == "stable"
-
idna==3.18[stable]extra == "stable"
-
jinja2==3.1.6[stable]extra == "stable"
-
joblib==1.5.3[stable]extra == "stable"
-
kiwisolver==1.5.0[stable]extra == "stable"
-
lightning-utilities==0.15.3[stable]extra == "stable"
-
llvmlite==0.49.0[stable]extra == "stable"
-
lxml==6.1.1[stable]extra == "stable"
-
markupsafe==3.0.3[stable]extra == "stable"
-
matplotlib==3.11.1[stable]extra == "stable"
-
mpmath==1.3.0[stable]extra == "stable"
-
multiprocess==0.70.19[stable]extra == "stable"
-
myst-parser[docs]extra == "docs"
-
myst-parser[development]extra == "development"
-
narwhals==2.24.0[stable]extra == "stable"
-
nbmake[development]extra == "development"
-
nbmake[tests]extra == "tests"
-
nbsphinx[docs]extra == "docs"
-
nbsphinx[development]extra == "development"
-
networkx==3.6.1[stable]extra == "stable"
-
numba==0.67.0[stable]extra == "stable"
-
numpy==1.26.4[stable]extra == "stable"
-
nvidia-cublas-cu12==12.4.5.8[stable]sys_platform == "linux" and extra == "stable"
-
nvidia-cuda-cupti-cu12==12.4.127[stable]sys_platform == "linux" and extra == "stable"
-
nvidia-cuda-nvrtc-cu12==12.4.127[stable]sys_platform == "linux" and extra == "stable"
-
nvidia-cuda-runtime-cu12==12.4.127[stable]sys_platform == "linux" and extra == "stable"
-
nvidia-cudnn-cu12==9.1.0.70[stable]sys_platform == "linux" and extra == "stable"
-
nvidia-cufft-cu12==11.2.1.3[stable]sys_platform == "linux" and extra == "stable"
-
nvidia-curand-cu12==10.3.5.147[stable]sys_platform == "linux" and extra == "stable"
-
nvidia-cusolver-cu12==11.6.1.9[stable]sys_platform == "linux" and extra == "stable"
-
nvidia-cusparse-cu12==12.3.1.170[stable]sys_platform == "linux" and extra == "stable"
-
nvidia-cusparselt-cu12==0.6.2[stable]sys_platform == "linux" and extra == "stable"
-
nvidia-nccl-cu12==2.21.5[stable]sys_platform == "linux" and extra == "stable"
-
nvidia-nvjitlink-cu12==12.4.127[stable]sys_platform == "linux" and extra == "stable"
-
nvidia-nvtx-cu12==12.4.127[stable]sys_platform == "linux" and extra == "stable"
-
openpyxl==3.1.5[stable]extra == "stable"
-
packaging==26.3[stable]extra == "stable"
-
pandas==2.3.3[stable]extra == "stable"
-
pandoc[development]extra == "development"
-
pandoc[docs]extra == "docs"
-
peptdeep==1.5.1[stable]extra == "stable"
-
pillow==12.3.0[stable]extra == "stable"
-
plotly==6.9.0[stable]extra == "stable"
-
pre-commit==4.3.0[development]extra == "development"
-
psutil==7.2.2[stable]extra == "stable"
-
pyahocorasick==2.3.1[stable]extra == "stable"
-
pyarrow==25.0.1[stable]extra == "stable"
-
pycparser==3.0[stable]extra == "stable"
-
pyparsing==3.3.2[stable]extra == "stable"
-
pyteomics==4.7.5[stable]extra == "stable"
-
pytest[tests]extra == "tests"
-
pytest[development]extra == "development"
-
python-dateutil==2.9.0.post0[stable]extra == "stable"
-
pythonnet==3.1.0[stable]extra == "stable"
-
pytz==2026.3.post1[stable]extra == "stable"
-
pyyaml==6.0.3[stable]extra == "stable"
-
pyzstd==0.19.1[stable]extra == "stable"
-
quantselect==0.1.3[stable]extra == "stable"
-
rdkit==2026.3.5[stable]extra == "stable"
-
regex==2026.7.19[stable]extra == "stable"
-
requests==2.34.2[stable]extra == "stable"
-
rocket-fft==0.3.1[stable]extra == "stable"
-
safetensors==0.8.0[stable]extra == "stable"
-
scikit-learn==1.9.0[stable]extra == "stable"
-
scipy==1.12.0[stable]extra == "stable"
-
seaborn==0.13.2[stable]extra == "stable"
-
six==1.17.0[stable]extra == "stable"
-
sphinx-design[development]extra == "development"
-
sphinx-design[docs]extra == "docs"
-
sphinx-rtd-theme[development]extra == "development"
-
sphinx-rtd-theme[docs]extra == "docs"
-
sympy==1.13.1[stable]extra == "stable"
-
threadpoolctl==3.6.0[stable]extra == "stable"
-
tokenizers==0.22.2[stable]extra == "stable"
-
torch==2.6.0[stable]extra == "stable"
-
torchmetrics==1.9.0[stable]extra == "stable"
-
tqdm==4.70.0[stable]extra == "stable"
-
transformers==4.57.6[stable]extra == "stable"
-
triton==3.2.0[stable]sys_platform == "linux" and extra == "stable"
-
typing-extensions==4.16.0[stable]extra == "stable"
-
tzdata==2026.3[stable]extra == "stable"
-
urllib3==2.7.0[stable]extra == "stable"
-
uv[development]extra == "development"
-
uv[tests]extra == "tests"
-
xxhash==3.8.1[stable]extra == "stable"
Used By
- alphaxtract 0/mo