PyRank
MannLabs

peptdeep

Deep learning framework for proteomics
PyPI GitHub
More links
Download Stats documentation download issues publication
Monthly downloads
2.1K
Weekly downloads
584
GitHub stars
159

Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.

Package Information

Latest Version
1.5.1
Requires Python
>=3.8.0
Licence
Apache License 2.0
Last Release
2 months ago
First Release
February 10, 2022
Total Releases
43
Python Versions
3
No reported malware or high/critical advisories · Details

The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.

Package Insights

What's this?
Score breakdown - each component scores 0-100, weighted by percentage
Maintenance
80
Popularity
45
Adoption
33
Community
45
Provenance
0
How the maintenance status was determined
Last commit
78 days ago
Monthly downloads
2,122
Active
Activity within 30 days
• Stable
Activity within 31-180 days
Minimal
Activity within 181-365 days, or no activity data
At Risk
No activity for > 365 days, but > 10,000 monthly downloads
Archived
Repository flagged as archived on GitHub
How the popularity category was determined
Monthly downloads
2,122
Stars
159
Stars per 1k downloads
74.93
Industry Standard
> 10,000,000 monthly downloads
Hidden Gem
< 0.5 stars per 1k downloads and > 100,000 monthly downloads
• Community Favorite
> 5 stars per 1k downloads
Rising Star
Balanced ratio of stars to downloads
Unknown
Fewer than 1,000 monthly downloads, or no star data
How download momentum is calculated
Week daily avg
83
Month daily avg
71
Momentum
—
((week_daily_avg - month_daily_avg) / month_daily_avg) * 100
Momentum not reported for packages with < 5,000 monthly downloads — percentages are noisy at low volume.
More insights and metrics
Python version support tiers
requires_python
>=3.8.0
Cutting Edge
Minimum supported version is 3.14 or newer
Modern
Minimum supported version is 3.11 to 3.13
• Legacy
Supports 3.10 or older (or Python 2)
Unknown
No requires_python specified or unparseable
License categories
License
Apache License 2.0
• Permissive
MIT, Apache, BSD, ISC, Unlicense, CC0, etc.
Copyleft
GPL, LGPL, AGPL, MPL, EPL, etc.
Proprietary
Commercial, all rights reserved, custom EULAs
Unknown
No license specified, or none of the above match
How the release cadence was determined
Last release
78 days ago
Total releases
43
Releases/year
9.2
Rapid
Last release within 365 days and > 12 releases/year
• Regular
Last release within 365 days
Slow
Last release 366-730 days ago
Stalled
Last release > 730 days ago, or no releases
Unknown
No usable release date available
How contributor risk was determined
Contributors
16
Monthly downloads
2,122
High Load
≤ 2 contributors and ≥ 50,000 monthly downloads
Moderate Load
< 10 contributors and ≥ 500,000 monthly downloads
Low Load
< 25 contributors and ≥ 5,000,000 monthly downloads, or sole maintainer with ≥ 10,000 monthly downloads
• Balanced
Enough contributors for the package's popularity
Unknown
No contributor data available
Engagement
61
 
Issue Burden
138.4
per 1k stars
Discussions
25.2
per 1k stars
Fork Ratio
59.3%
contrib / forks
Stale Release
No
 
PR Velocity
Quiet
 
Not all downloads include detailed metadata. Breakdowns reflect the subset that does.

Downloads by OS

Linux 11
Windows 9

Python Versions

3.9
40.0% 8
3.11
25.0% 5
3.12
20.0% 4
3.10
15.0% 3

Top Countries

1. IR IR
80
2. US US
50
3. GB GB
2
4. CN CN
1
5. DE DE
1
6. FR FR
1
7. HK HK
1
8. IN IN
1
9. SG SG
1

Weekly Downloads

GitHub Stars

Dependencies

15
45 optional dependencies
  • alphabase>=1.5.0[stable]
    extra == "stable"
  • alpharaw>=0.6.0[stable]
    extra == "stable"
  • autodocsumm[docs]
    extra == "docs"
  • autodocsumm[development]
    extra == "development"
  • click==8.1.7[stable]
    extra == "stable"
  • contextfilter[docs]
    extra == "docs"
  • contextfilter[development]
    extra == "development"
  • furo[development]
    extra == "development"
  • furo[docs]
    extra == "docs"
  • ipykernel[development]
    extra == "development"
  • jinja2[development]
    extra == "development"
  • jinja2[docs]
    extra == "docs"
  • jupyter[development]
    extra == "development"
  • lxml==5.3.0[stable]
    extra == "stable"
  • myst-parser[development]
    extra == "development"
  • myst-parser[docs]
    extra == "docs"
  • nbmake==1.5.3[tests]
    extra == "tests"
  • nbmake==1.5.3[development]
    extra == "development"
  • nbsphinx[docs]
    extra == "docs"
  • nbsphinx[development]
    extra == "development"
  • numba==0.60.0[stable]
    extra == "stable"
  • numpy<2[stable]
    extra == "stable"
  • pandas==2.2.3[stable]
    extra == "stable"
  • pre-commit==3.7.0[development]
    extra == "development"
  • pre-commit==3.7.0[tests]
    extra == "tests"
  • psutil==6.1.0[stable]
    extra == "stable"
  • pydivsufsort[hla]
    extra == "hla"
  • pydivsufsort[hla-stable]
    extra == "hla-stable"
  • pyteomics==4.7.5[stable]
    extra == "stable"
  • pytest[tests]
    extra == "tests"
  • pytest[development]
    extra == "development"
  • pythonnet==3.0.4[stable]
    sys_platform == "win32" and extra == "stable"
  • pywin32==308[stable]
    sys_platform == "win32" and extra == "stable"
  • scikit-learn==1.6.0[stable]
    extra == "stable"
  • seaborn[tests]
    extra == "tests"
  • seaborn[development]
    extra == "development"
  • sphinx[development]
    extra == "development"
  • sphinx[docs]
    extra == "docs"
  • streamlit>=1.23.0[gui]
    extra == "gui"
  • streamlit==1.40.2[gui-stable]
    extra == "gui-stable"
  • streamlit-aggrid==1.0.5[gui-stable]
    extra == "gui-stable"
  • streamlit-aggrid[gui]
    extra == "gui"
  • torch==2.5.1[stable]
    (sys_platform != "darwin" or platform_machine != "x86_64") and extra == "stable"
  • tqdm==4.67.1[stable]
    extra == "stable"
  • transformers==4.47.0[stable]
    extra == "stable"

Used By

8

Repository details

Forks
27
Issues
22
Last Commit
2 months ago
Contributors
16
Open PRs
5
Archived
No

Data and sources

Tracking Since
September 26, 2026
Data Updated
October 11, 2026
Data Freshness
Fresh
Keywords
mass spectrometry proteomics bioinformatics AlphaPept AlphaPept ecosystem deep learning alphapept.org
Sources and methodology