Spatial Statistics Python Packages

libpysal

Core components of Python Spatial Analysis Library

spreg

Spatial econometric regression in Python

giddy

Exploratory spatiotemporal data analysis and Geospatial distribution dynamics analysis

access

Classical and novel measures of spatial accessibility to services

pykrige

Kriging Toolkit for Python

spglm

SParse Generalized Linear Models (spglm)

morie

Multi-domain Open Research and Inferential Estimation

spatioloji-s

Python toolkit for image-based spatial transcriptomics (CosMx, MERFISH, Xenium). Unified data object for expression, polygons, and FOV images, plus QC, clustering, point- and polygon-based spatial statistics, and polygon-native cell-cell communication using real membrane contact geometry.

pygeostats

High-performance spatial statistics library for Python with Rust-accelerated core algorithms

flashs

Spatially variable gene detection via frequency-domain kernel testing

spatiomic

A Python package for unsupervised analysis of spatial (prote)omics data.

insurance-spatial

BYM2 spatial territory ratemaking for insurance pricing — PyMC 5 ICAR, adjacency, Moran's I diagnostics

fastgwr

Fast Geographically Weighted Regression (FastGWR)

stsckm

Official implementation of ST-SCKM: A spatially constrained spatio-temporal clustering algorithm for GeoAI, wildfire risk zoning, and spatial data science.

spatial-adapter

Spatial adapter for frozen predictors: low-rank residual decomposition, closed-form covariance, and kriging-style prediction.

structure-factor

Compute structure factor of stationary and isotropic point processes

nearmiss-safety

Beta. Statistically honest analysis of road hazards and near misses for safe-streets advocacy: every published rate carries its confidence interval and its denominator, because a count without exposure is not a risk. The committed city datasets are synthetic demonstrations; the reviewed 2020-2024 NHTSA FARS reference surface is real.

neighbayes

modeling neighborhood spillovers with Bayesian inference

fragstatspy

A Python wrapper for Fragstats.

styne

Bayesian inference and sampling algorithms for high-dimensional problems and expensive forward models.

occuspytial

A package for fast bayesian analysis of single season spatial occupancy models.

mgwrvisualizer

Novel Visualization Suite for Multiscale Geographically Weighted Regression (MGWR)

insurance-spatial-conformal

Spatially weighted conformal prediction intervals for geographically calibrated UK insurance pricing

insurance-scmoe

Spatially Clustered Mixture of Experts for joint frequency-severity insurance pricing (NAAJ 2025)